Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0551 ATGTCGAAGAGGAAGTTCGGAATCGAAGGGTTCGGCATAAATCGCCAATCAACCTACAGTTTCGAACGATCTCAAGCCCCTCAGCGACTCTACGTCCCTCCCTCCTCCCGCCACGGCCACGACAACTACGAAGACACAGACCTCGACAACATCGAGTACGACGACAACGACGGCGCCAAGGAAGACGGCAATAAAAACAATGGCGGCAACGAGGAGGAGGAAATCGATCCCTTAGATGCGTTCATGGAAGGGATTCACGAAGAGATGAGGGCGGCGCCGCCTCCGAAGCCGAAGGAGAAGGTAGAGGATAGGTATAGAGACGACGAAGAGGACGATCCTATGGAGAGCTTTCTGAAGGCAAAGAAGGACCTAGGGTTGACGCTTGCGTCGGAGGCGCTGCACGCTGGTTATGATTCTGATGAAGAGGTTTATGCTGCTGCCAAAGCTGTGGACGCTGGTATGATTGAGTACGATTCTGATGATAACCCTATTATTGTTGACAAGAAGAAAATTGAGCCCATACCTGCTCTTGATCACTCTTCCATTGATTACGATTCCTTTAATAAGGATTTTTATGAGGAGACCCCTTCAATATCAGGTATGAGTGAGCAGGATGTAACTGAATTTAGGAAGAGTTTGGCTATTCGTGTGTCAGGTTTTGATGTTCCTAAGCCAATAAAGGCATTTGAGGACTGTGGGTTCGCTCCACAGATTATGAATGCTATAAAAAAACAAGGGTATGAGAAGCCCACGTCTATACAATGTCAAGCTTTGCCAGTTGTGCTTTCTGGTAGAGATATAATTGGCATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAGGAGGGTCCGATAGGGGTGATATGTGCGCCTACCAGAGAATTGGCACATCAGATATATTTGGAATCCAAGAAATTTGCAAAATCGTATGGTATACGCGTCGCTGCTGTGTATGGTGGAATGTCAAAACTTGATCAGTTCAAAGAACTCAAGGCCGGCAGTGAGATTGTTGTTGCTACACCTGGCAGATTGATAGACATGCTAAAAATGAAGGCGTTGACAATGACGAGGGCAACTTACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGATTTGAGCCACAAGTGAGGTCCATTGTTGGTCAGATTCGGCCAGACCGTCAAACTTTACTCTTTTCTGCAACGATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTATTAGGGTAACTGTTGGTGAGGTTGGAATGGCAAATGAAGATATTACACAAGTTGTTCATGTAATTCCTTCTGATTCTGAAAAATTGCCATGGCTTCTGGAAAAGTTGCCTGAAATGATCGATCAAGGTGATACCCTTGTATTTGCTTCCAAAAAGGCTACTGTGGATGAAATTGAATCACAATTGGCTCAAAGAGGGTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCCTCTACCATGTGCTTGTTGCAACTGATGTTGCTGCTCGTGGTCTTGATATCAAGTCAATTAAGTCGGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGATGGGGTTGCATACACCCTAATAAGTCAGAAAGAGGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAATTGCTGCCGGTCAGAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGATCGAAGCGTGATGCAAGAAAAGGGGGTGGGAGAAAAGGCAAAGGCAGAGGTGGTGGCGGGGGTGGCCGAGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATAAACCAGAGTCAAACATCGCATCATCTAACACGGTTCCAAGTCGATCTGCCGCTGTAAATTCATTGCGAACAGGAATGATGTCACAATTTAGGAGCAACTTCGTTGCTGCTTCATCGAACACACAGAATCAAGAATTCAGTAACAATACAAGCATGGCTGCAAATAAGAGACCAGCACTCCCTGGTTTTGTATCTGGTGGATCAATTGGGGGTGAGATAAATACTCATCAACATACTGCTTCATCAAGTCCTGCTACATCAGCAGTAAATTTCTCTAGTCAAAGTTCTGGAGTAAATCCTGGTCAGAAGAGCACCAACAGTTCTAAACCTAGAGAAAGGCGGAGGCCATCAGGTTGGGATAGATAG 2316 0.4542 MSKRKFGIEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDGAKEDGNKNNGGNEEEEIDPLDAFMEGIHEEMRAAPPPKPKEKVEDRYRDDEEDDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIIVDKKKIEPIPALDHSSIDYDSFNKDFYEETPSISGMSEQDVTEFRKSLAIRVSGFDVPKPIKAFEDCGFAPQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLESKKFAKSYGIRVAAVYGGMSKLDQFKELKAGSEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLVATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLISQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKGKGRGGGGGGRGVRGVDFGLGIGYKPESNIASSNTVPSRSAAVNSLRTGMMSQFRSNFVAASSNTQNQEFSNNTSMAANKRPALPGFVSGGSIGGEINTHQHTASSSPATSAVNFSSQSSGVNPGQKSTNSSKPRERRRPSGWDR* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0551 771 MobiDBLite consensus disorder prediction 720 756 - -
Apr4g0551 771 Gene3D - 435 611 IPR027417 -
Apr4g0551 771 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 379 387 IPR000629 -
Apr4g0551 771 MobiDBLite consensus disorder prediction 757 771 - -
Apr4g0551 771 SMART helicmild6 486 567 IPR001650 -
Apr4g0551 771 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 655 - -
Apr4g0551 771 MobiDBLite consensus disorder prediction 1 74 - -
Apr4g0551 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 605 IPR027417 -
Apr4g0551 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 607 IPR001650 -
Apr4g0551 771 MobiDBLite consensus disorder prediction 88 112 - -
Apr4g0551 771 MobiDBLite consensus disorder prediction 57 72 - -
Apr4g0551 771 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 655 - -
Apr4g0551 771 MobiDBLite consensus disorder prediction 612 638 - -
Apr4g0551 771 CDD SF2_C_DEAD 445 577 - -
Apr4g0551 771 Pfam DEAD/DEAH box helicase 251 422 IPR011545 GO:0003676|GO:0005524
Apr4g0551 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 436 IPR027417 -
Apr4g0551 771 MobiDBLite consensus disorder prediction 13 31 - -
Apr4g0551 771 SMART ultradead3 246 448 IPR014001 -
Apr4g0551 771 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 227 255 IPR014014 GO:0003724
Apr4g0551 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 258 433 IPR014001 -
Apr4g0551 771 Gene3D - 190 434 IPR027417 -
Apr4g0551 771 MobiDBLite consensus disorder prediction 712 771 - -
Apr4g0551 771 CDD DEADc_DDX42 238 434 - -
Apr4g0551 771 Pfam Helicase conserved C-terminal domain 462 567 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0551 Apr-Chr4 4559067 4563226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0551 224 588 Eukaryotic Initiation Factors Gene Family AT3G19760 31.250 1.47e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0551 K12835 - gmx:100814854 1315.83