Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0544 ATGAGGATTGAACTTCGCAAACAACCTGGAAAAGCAATATCAGATCCTATTAGAAACTTGTTGACCAAGATAAATCAGTTGATAGAGCAAACCCATTGGAGGAGAAAGGGATCAATCGATGAAAAGCTCCGGAATAACTGGGAGACTGTTGAAAGCCAGCTTGTAATGGTCATGTCAGAAATATCAAGTAGGGACTCATTGGAGACTGAGGAAAATACCAATATGCTTGCTTCAAGAATTGAACGCCCTTTACGTATATTCAGTGGTTTCCCTCAAGGTGGTTTGGTAGAGATGGACTTCGAGGACATATTATCTGAAACAAGCATCAAGATACCATACATGGAAAAAGTACCACGATATACAGCTTGGGTACATTTGATCAGAAATCAGAGAATGGCCCCAGATCAGTCTGTTATTGGGAAAAGGCAAATATACTATGATCAACATGGAGGTGAAACGCTGATATGCAGTGACAGTGATGAAGACGAACCTGCGGAAGAGGAACATAAGTTCACTGAGGCTGAAGACGAAATTCTGAGGATGGCATATGAGGAACTTGGGTTGATTGAGGAGGTAATGAGCATCGTTAGGCTGTTTGTTCTTGGTTCAGAATCAGAGATTAAGGAGAGGTATGAAAATCTCAAGGAGAAGAATATGAGGAGTCTAGAGCAGCATTCTGAAGATTCTGGAGGATGTGAATCTCTTACTGGCATATGTTTGGAGAAAAGCTTGAATGATGCTTTAGATTTTTTCGATAATCTTTTTTGTCGCCAGTGCATCCGGGTCTATGACTGTCCTGTGCATGGCTGTTCTCAACCTTTAATATATCCTAGTGAAAAGCAGCCAATTTGGTCCGAACCTGAAGGTGAGAGGGAACCATGCAGTGATCAGTGTTACCTTCTGTTGAAAGAAAATTCAGCTCTAGGGTCTTCTCAGGATAAAAAAATTAAACCAATGTTAGAGGTAGAAGGGATATTGACACCCTCCAGTTCAAAGGAGCCTGGTAATCATCAGAGTACCAAAGCTAACTGGCAGAAAGAAAGATCCCGTTATGTGACAGTACCTCTTACAACAGAAATTTGTTCTCATGGAGATCCCAATTCGGATGTGCCTGTATCAGAAAGTATGGGGAAAAGGAAGGTCATTAATCCGTCAGACTCAGTACTGCATGACTCAACATTGCCTCCTGCTGAGTCTCTGATGCCTCCCGATGAGTCTCTCAGTTCTTGTAAAAAGCTGAAGAAAATCTCAGATGATGTAGTTACCGCAAATGGCAATCACAACAAGGACCTAAATTTGGATGCTTGTGATGAAGAAAAACGCACAATTAATTCTTCATCTTTGACAAACCTTGCTGAACATACTTCAAATAAATTGTTAGTTTCTGGTAGCAGCTGCCGTGGTGAGCATGACAAGGGAGTTGAGGATGGACGAAAAGATCTCACAAAAGAGATAGAATTTGAGCAGCATTCTAATTCAACGGAAATGCAAGTTGATGAGATGCCAAGTATCTCAGATTGGAAACTTCTGGAGAAAGACTTATATTTGAAGGGAGTAGAAATGTTTGGGAGAAATAGTTGCCTTATAGCCCGGAACTTACTTTCTGGCATGAAGACTTGCATGGAAGTAGCTACATATATGTGTGCTGGGGGAGAGTCAATGGCCCACAAATCCATAGCAGGATCAATCATGGACAAAATTGAAAAGATTAATACAGAGAACACAGACCAAGAAGTGCCATCAAGATCACGGTTGCTGCGGAAAAGGGGCAAACCCAGGAAGTTCACATCTTCTCGGAAGTCTGCCGGCCTCCCGTCTACATGGAGAATTGCTCATGGAAAAAATCTGGGTAACAAGCAGTATACTCCATGTGGGTGCCGTGGAATGTGTGGAAAACAATGTCCTTGTCTTCGTAACGGAACTTGCTGCGAAAAATATTGTGGGTGTTCAAAGATCTGCAAGAACCGATTCAGAGGATGTCACTGTGTTAAAAGTCAATGCAGAAGTCGACAATGCCCATGCTTTGCAGCCAACCGTGAATGTGACCCAGATGTCTGTCGAAATTGTTGGGTTAGTTGCGGCGATGGTTCATTAGGGCAGCCAGCTCGACGTGGAGATGGTCAATGTGGAAACATGATGCTTCTTTTAAGACAAAAACAGAGGATTCTTTGGGCAAAGTCTGATGTTGCAGGATGGGGAGCCTTCTCAAAGAACCCAGTTAACAAAAATGATTGCCTAGGAGAGTACACGGGTGAACTAATCGGTCAGAAAGAAGCAGAGAAGCGAGGGAAACTATATGATCGTGCAAATTACTCATTCCTTTTTAATCTTAATGATCAGTACGTTCTTGATGCTTATCGCATAGGAGACAAGTTGAAATTTGCGAACCACTCATCAAAACCCAACTGCTATGCTAAGGTGATGCTCGTTGCAGGGGATCATCGAGTTGGCATATTTGCCAAGGAGAACATTAAAGCTGGTGAGGAGCTATTCTATGATTATTTTTATGGTCCAGATCAATCACCGCCATGGATTCGTAAACTGAAAGCTGAGAAAGCCAAGAAAGAGGAATCAGCAGCTTCTCAGAGCAAAGCAAAGAAACACCAGTCTCATTGA 2616 0.4235 MRIELRKQPGKAISDPIRNLLTKINQLIEQTHWRRKGSIDEKLRNNWETVESQLVMVMSEISSRDSLETEENTNMLASRIERPLRIFSGFPQGGLVEMDFEDILSETSIKIPYMEKVPRYTAWVHLIRNQRMAPDQSVIGKRQIYYDQHGGETLICSDSDEDEPAEEEHKFTEAEDEILRMAYEELGLIEEVMSIVRLFVLGSESEIKERYENLKEKNMRSLEQHSEDSGGCESLTGICLEKSLNDALDFFDNLFCRQCIRVYDCPVHGCSQPLIYPSEKQPIWSEPEGEREPCSDQCYLLLKENSALGSSQDKKIKPMLEVEGILTPSSSKEPGNHQSTKANWQKERSRYVTVPLTTEICSHGDPNSDVPVSESMGKRKVINPSDSVLHDSTLPPAESLMPPDESLSSCKKLKKISDDVVTANGNHNKDLNLDACDEEKRTINSSSLTNLAEHTSNKLLVSGSSCRGEHDKGVEDGRKDLTKEIEFEQHSNSTEMQVDEMPSISDWKLLEKDLYLKGVEMFGRNSCLIARNLLSGMKTCMEVATYMCAGGESMAHKSIAGSIMDKIEKINTENTDQEVPSRSRLLRKRGKPRKFTSSRKSAGLPSTWRIAHGKNLGNKQYTPCGCRGMCGKQCPCLRNGTCCEKYCGCSKICKNRFRGCHCVKSQCRSRQCPCFAANRECDPDVCRNCWVSCGDGSLGQPARRGDGQCGNMMLLLRQKQRILWAKSDVAGWGAFSKNPVNKNDCLGEYTGELIGQKEAEKRGKLYDRANYSFLFNLNDQYVLDAYRIGDKLKFANHSSKPNCYAKVMLVAGDHRVGIFAKENIKAGEELFYDYFYGPDQSPPWIRKLKAEKAKKEESAASQSKAKKHQSH* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0544 871 SUPERFAMILY SET domain 618 836 IPR046341 -
Apr4g0544 871 MobiDBLite consensus disorder prediction 851 871 - -
Apr4g0544 871 MobiDBLite consensus disorder prediction 326 345 - -
Apr4g0544 871 Gene3D SET domain 621 836 IPR046341 -
Apr4g0544 871 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 6 871 IPR025778 GO:0031519
Apr4g0544 871 ProSiteProfiles CXC domain profile. 607 706 IPR026489 -
Apr4g0544 871 MobiDBLite consensus disorder prediction 329 345 - -
Apr4g0544 871 Pfam CXC domain 659 690 IPR041355 -
Apr4g0544 871 Coils Coil 204 228 - -
Apr4g0544 871 MobiDBLite consensus disorder prediction 575 603 - -
Apr4g0544 871 Pfam SET domain 731 834 IPR001214 GO:0005515
Apr4g0544 871 ProSiteProfiles SET domain profile. 720 835 IPR001214 GO:0005515
Apr4g0544 871 MobiDBLite consensus disorder prediction 385 406 - -
Apr4g0544 871 SMART set_7 720 841 IPR001214 GO:0005515
Apr4g0544 871 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 13 869 IPR045318 GO:0006338|GO:0018024
Apr4g0544 871 SMART CXC_2 655 692 IPR033467 -
Apr4g0544 871 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 13 869 - -
Apr4g0544 871 CDD SET_EZH 720 836 - -
Apr4g0544 871 Coils Coil 845 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0544 Apr-Chr4 4518886 4527117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0544 709 838 C2H2 Transcription Factor Family AT2G23740 27.891 7.94e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr4g0544 SET 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0544 - K11430 gmx:100808730 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0544 4 4518886 4527117 Apr8g0068 8 578611 587818 PCT