Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0539 ATGTCTTCCGTTCAACGTTCGGCGAGTTCGGGATCCGAAGGCGGAGATCCGCAAATCGACGAGAGGAAGAGGAAGAGGATGCTGTCTAACCGTGAATCTGCGAGGCGATCGCGGATGAGGAAGCAGAAACAGCTGGAGGATCTGACCGATGAAGTCAGCAAATTGCAAGGTTCGAACAAGAAGCTTGTAGAGAGCATTAAGGCCAAGGAAGAAGCATGCGTTGAGACCGAAGCTGCTAACAGCATCCTTAGGGCTCAAACAATGGAACTAACCGATCGATTGCGGTTTCTGAACTCTATCCTTGAGATTGCTGAAGAGGTCAGCGGGTTCTCCGTTGAGATTCCAGAAATTCCAGATCCTCTTCTTAAACCGTGGCAGATTCCTCATCCAACTCAACCGATTGTGGCGTCGGCGAACATGTTTCTGCGTTGA 432 0.5023 MSSVQRSASSGSEGGDPQIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVSKLQGSNKKLVESIKAKEEACVETEAANSILRAQTMELTDRLRFLNSILEIAEEVSGFSVEIPEIPDPLLKPWQIPHPTQPIVASANMFLR* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0539 143 Gene3D - 20 76 - -
Apr4g0539 143 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 141 - -
Apr4g0539 143 SMART brlzneu 18 82 IPR004827 GO:0003700|GO:0006355
Apr4g0539 143 Coils Coil 31 65 - -
Apr4g0539 143 MobiDBLite consensus disorder prediction 16 54 - -
Apr4g0539 143 Pfam bZIP transcription factor 22 73 IPR004827 GO:0003700|GO:0006355
Apr4g0539 143 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 25 40 IPR004827 GO:0003700|GO:0006355
Apr4g0539 143 SUPERFAMILY Leucine zipper domain 22 70 IPR046347 GO:0003700|GO:0006355
Apr4g0539 143 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 141 - -
Apr4g0539 143 MobiDBLite consensus disorder prediction 1 54 - -
Apr4g0539 143 CDD bZIP_plant_GBF1 23 73 IPR045314 GO:0003700|GO:0006355
Apr4g0539 143 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 20 67 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0539 Apr-Chr4 4486624 4488138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0539 1 141 bZIP Transcription Factor Family AT3G62420 55.862 2.42e-50 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr4g0539 bZIP_1 7.8e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0539 K25786 - gmx:778144 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0539 4 4486624 4488138 Apr8g0072 8 599650 602094 PCT