Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0536 ATGAGTCTCTACTCATCCATGGTTTTGCGTCCTTCGTCTCTCGTCATTGTACTGGCTTACGCTGCGCTGTTAGTTCTTACCACATTGACGCCATGCTGGTATGTCATGGTCACGCAACTAGAGCAGCGTGTGATTTTGAATTCAGAAACTGTTCTCTCCCAATTTCAATCCGAAATTGAGCATTCAGCTACACTGATACACCCTATAAATTCGTCCTCAACCAAGGTCGCAAAATTTTTGAGTTCAACTCTCAAAGCTGCTAACATCTCATTCTCTGATATCGTGACCAAGGTGGCTCCATTATTATTTCAAGCATTTGAGACGGTTCCTCACTTAGCCCAAATCTCATACATGGGGATGGAAGGTCTTTTTTTCTCGTACTACACTGATAACGATAAAGTTTTGGCAATGTACTCAAACTCGTCATTTCCTTCGACTTCTCCTTGGAGTGCCTCGAAAGCAAAAGTATATCATATTCAACCAGTAAATCGTGACACTGGAGAGTTATATGGAGAAGCCATAGTATCTGAACCCTCTATCAATTCAAGTTTGTTTGCACAAGTGGTTATAAATAGTTCAAATGGGCATGCCTCATTGGGAACCAAGTGGAACCACGCTCATGATCTTCTATTCATTAGTTCAGCTAGAATCACAGGGGTTGGAGGGGTCTCTTTAGGTTTTCCAGCAACAACAATAGCTAATTTTTTATCTCATGTTGGTTATCAAGGAGCAAGCTTGTATTTGGCAACCAAAGATGGAAAAGTTCTTGTAGAAGGGATCCAAAATACTAGTATGGTTATTTATAATGATACGGTTTCCTTCCAATCAGTGAATGTTAATGGTGATCACACAAGTTATTATGATGGCACTGTCTCATGCAAAGGTGGAGATGGGGATGTTACTTCTATTTTGAATATTCAGGATACTGAGTATTTAATTCACTGCTCCCCCATTGATATAATGGGAATAGAATCGGTGTATGTTTTGGCTGTCCCAAACAATGGGTTGGTTCGCTATGTTCACGAGATTAAGAAAAAAGGATTGACGTTAATGACTGTGATGATGGTAATGGCACTGGTTGCCATGCTTAGTTTTCTATTTACAAATGTTAGATTACTTAAGCGAGAAATGCACTTGTGTGCGTCACTCATCAAACAAATGGAAGCTACCCAACAAGCTGAGCGGAAGAGTATGAATAAGAGCCATGCTTTTGCTAGTGCCACCCATGATGTTCGAGCTTCGTTGGCGGGCCTTACTGGTTTGATAGAGATGTGCTACCATGAAGTTGTCCCTGATTCTGAATTGGAGACCAACTTAAAACAAATGGATTCTTGTACCAAAGATTTACTAGGACTCTTGAATTCTATACTTGATACAAGCAAAATTGAAGCGGGCAAAATGCAGCTTGAGGAAGAGGAATTTGATATATTCCAACTCTTAGAAGATGTGGTTGATTTATATCATCCCGTAGGTATGAAGAAAGGTGTAGAGATAGTGATGGACCCTTGTGATGGTTCTCTACTCAGATATTCACGAACCAAAGGCGACAGAGGAAAACTGAAACAAGTTTTGTGCAATTTACTGAGCAATGCAGTAAAATTTACGAGTGAGGGGCACATAGCGGTTCGAGCATGGGCTCGGAAGCCAAGCTTGAAGAGCTCATTAAACGCTACTAACCGATACAGGTTAAAGAGACTTTTGTCATGTGTTTTTTATAGGAAAAAAGAAGCACTTGATGACATAGAGGCAATCCAATATGATCCAAATTGTATGGATTTTACGTTTGAAGTGGATGACACTGGCATTGGAATTCCCAAGGAGAAGTACAAGTCTGTATTTGAGAATTATGTCCAAGTCAAAGAAACTGCTCTTGGCCATGAAGGAACTGGCTTGGGACTTGGTATTGTCCGGTCCTTGGTACGATTGATGCACGGAGATATTGGAATTATGGACAAGGACATTGGCGAAAAAGGAACCTGCTTTAGGTTCAATGTGCTCCTCACTGTACATGAGACACAAACGAATGGTGAAACTATAGAGTGTTGGTTTGGATCAAGAGGAAATCAAGCTCAGGGACTAACCATTCGCACTACAAGTCCTGCTTCAAGCATGGGTTCCATGAATCCCAGGTTACCTATCATCAGTCCTAGTCCAAGACCTGAGGCTTCTCAAGTTGTTCTTTTGATTCAAAATGAAGAACGCCTAAGGACTAATCAGAGGTTCATGAAGAACTTAGGGATCAAAGTTAAGGTTGTGAAGGAGTGGAGAGATTTATCTTACACTCTAAGGAAGATCAAACAAAAGGGGCTCCATTCCACTAGCCCAAGATCTCCATGGTCTTCTTCAGATTCTCCATCTACATCTTTTGGAAGAGCCAGAGGAGTCCGTTTGAGTGCCATGGATGGATCTGACTATATGAATTCCATCTTCAAGAAGACAGATATTGAAGCTACCATGAGTTTCATCCTGATTGTGATTGATGCAAATGCAGGACCATTTTCAGAACTTTGCATGGTGATATCTGACTTCAAAAGAGGCCTAAACAACCCTACGAGGGTTGTTTGGTTGGAAAAGCCACTTATGCCTGGCGTTGACTTCAAATTCCTTGAGGAGGATGCTTCTCATTCAAACGACATTGTCTTGTGCAAGCCATTTCATGGTAGCCGTTTATTCAAAGTTATAAGGATTCTTCCTGAGTATGGTGGTGTTTGGCAGTGTAATTCTAGTATAGTAAATAAAGAAAGGTATCAAGCTTCCTCAAGTGCTCCTGAAGGTGCAAGTCAAAGTGTTGAAGGACGAAAGTATGATAGATTTAAAGCAGGAAAATTTCCAATTCACCAAGGAGAAATACAAGAATGTGGAGGATCAAGCAATGGCAAATCCTTGAGGGGTATGAAATTTTTGGTTGTTGAGGACCATGTTTTGTTGCGTAGGATAACTAAGGCAAATTTGGAACGGCTTGATGCGTCTATCGAGGAATGTGAGAATGGTGAAGAAGCTGTTGGGCTAGTTGAAGAGGGTTTAACTCGGAATTCTTCCAATCCTCCATATGATTACATCTTAATGGACTGCCAGATGCCGGTAATGGGTGGATACGAGGCAACAAGGAGGATAAGGGAGATTGAGAAGCCCTATGGCGTTCGCATTCCAATTTTTGCATTAACTGCTAATACGGGGGAAGAGGCAAAGTGGTCCATAGAAGCTGGAATGGACGATCACTTAGTCAAACCCATCAATCAAGTGGCTTTACTTGAAGCAGTCAGAAACATACATAACAAACAGTGA 3285 0.4125 MSLYSSMVLRPSSLVIVLAYAALLVLTTLTPCWYVMVTQLEQRVILNSETVLSQFQSEIEHSATLIHPINSSSTKVAKFLSSTLKAANISFSDIVTKVAPLLFQAFETVPHLAQISYMGMEGLFFSYYTDNDKVLAMYSNSSFPSTSPWSASKAKVYHIQPVNRDTGELYGEAIVSEPSINSSLFAQVVINSSNGHASLGTKWNHAHDLLFISSARITGVGGVSLGFPATTIANFLSHVGYQGASLYLATKDGKVLVEGIQNTSMVIYNDTVSFQSVNVNGDHTSYYDGTVSCKGGDGDVTSILNIQDTEYLIHCSPIDIMGIESVYVLAVPNNGLVRYVHEIKKKGLTLMTVMMVMALVAMLSFLFTNVRLLKREMHLCASLIKQMEATQQAERKSMNKSHAFASATHDVRASLAGLTGLIEMCYHEVVPDSELETNLKQMDSCTKDLLGLLNSILDTSKIEAGKMQLEEEEFDIFQLLEDVVDLYHPVGMKKGVEIVMDPCDGSLLRYSRTKGDRGKLKQVLCNLLSNAVKFTSEGHIAVRAWARKPSLKSSLNATNRYRLKRLLSCVFYRKKEALDDIEAIQYDPNCMDFTFEVDDTGIGIPKEKYKSVFENYVQVKETALGHEGTGLGLGIVRSLVRLMHGDIGIMDKDIGEKGTCFRFNVLLTVHETQTNGETIECWFGSRGNQAQGLTIRTTSPASSMGSMNPRLPIISPSPRPEASQVVLLIQNEERLRTNQRFMKNLGIKVKVVKEWRDLSYTLRKIKQKGLHSTSPRSPWSSSDSPSTSFGRARGVRLSAMDGSDYMNSIFKKTDIEATMSFILIVIDANAGPFSELCMVISDFKRGLNNPTRVVWLEKPLMPGVDFKFLEEDASHSNDIVLCKPFHGSRLFKVIRILPEYGGVWQCNSSIVNKERYQASSSAPEGASQSVEGRKYDRFKAGKFPIHQGEIQECGGSSNGKSLRGMKFLVVEDHVLLRRITKANLERLDASIEECENGEEAVGLVEEGLTRNSSNPPYDYILMDCQMPVMGGYEATRRIREIEKPYGVRIPIFALTANTGEEAKWSIEAGMDDHLVKPINQVALLEAVRNIHNKQ* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0536 1094 CDD HisKA 400 461 IPR003661 GO:0000155|GO:0007165
Apr4g0536 1094 MobiDBLite consensus disorder prediction 698 718 - -
Apr4g0536 1094 PRINTS Bacterial sensor protein C-terminal signature 593 607 IPR004358 GO:0016310|GO:0016772
Apr4g0536 1094 PRINTS Bacterial sensor protein C-terminal signature 611 621 IPR004358 GO:0016310|GO:0016772
Apr4g0536 1094 PRINTS Bacterial sensor protein C-terminal signature 627 645 IPR004358 GO:0016310|GO:0016772
Apr4g0536 1094 ProSiteProfiles Response regulatory domain profile. 966 1091 IPR001789 GO:0000160
Apr4g0536 1094 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 387 467 IPR036097 GO:0000155|GO:0007165
Apr4g0536 1094 SUPERFAMILY CheY-like 962 1091 IPR011006 -
Apr4g0536 1094 SMART HKATPase_4 515 669 IPR003594 -
Apr4g0536 1094 SMART REC_2 965 1087 IPR001789 GO:0000160
Apr4g0536 1094 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 515 667 IPR003594 -
Apr4g0536 1094 Gene3D - 946 1094 - -
Apr4g0536 1094 CDD REC_hyHK_CKI1_RcsC-like 967 1087 - -
Apr4g0536 1094 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 454 665 IPR036890 -
Apr4g0536 1094 SMART HisKA_10 399 465 IPR003661 GO:0000155|GO:0007165
Apr4g0536 1094 Gene3D - 386 466 - -
Apr4g0536 1094 Pfam Response regulator receiver domain 968 1088 IPR001789 GO:0000160
Apr4g0536 1094 MobiDBLite consensus disorder prediction 769 790 - -
Apr4g0536 1094 Gene3D - 467 674 IPR036890 -
Apr4g0536 1094 PANTHER HISTIDINE KINASE CKI1-LIKE 39 1089 - -
Apr4g0536 1094 ProSiteProfiles Histidine kinase domain profile. 406 669 IPR005467 -
Apr4g0536 1094 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 1089 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0536 Apr-Chr4 4460346 4466694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0536 10 1094 Histidine Kinase Gene Family AT2G47430 39.458 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr4g0536 HATPase_c 1.5e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0536 - - gmx:100790376 1358.58