Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0534 ATGGCAGAGGTTGTCTTGATAGTTGATGATTTGAAATTACTTTTTGGGATTCCTCGTTGTAGAATATGTCATGACGAAGAGTTTGAAAGCTGTGAAAGCTTGGAAGCACCTTGTGCTTGTTCTGGGACTGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACAATTTGTGAAATATGTCTCCAGCAATATGAACCTGGATATTCAGCTCCGCCAAAGTCCAAAATAGATGATGAAGTAATATCCATTAGGGGGGAGGAAGAACCGTCCAACGCAAGAATAGAGGGTATGGTTGAAGGAGTTGCAATAGAAAGCAATTACTCTGAATGCAGCTCTGCCGCGGACAGAAACGCGTCTTGCTGTCGATCACTAGCAATAGCTTTTACAATTGTCCTACTTGTAAGACATCTTTTCGCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTTCTTACAGTCATTATACTAAAGGCTAGCGGAATTATTATACCCATGTACATAGTTATCAAGATAATCGGAGTCATTCAGAACAGTATTCAGCACTATCAGGATTCTTACTATGACACGTCAATGTCTGACGAAGACGACGAAAGTGAGACACAGCATAATGCAAATTTAAGACACTCATAG 657 0.4018 MAEVVLIVDDLKLLFGIPRCRICHDEEFESCESLEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYSAPPKSKIDDEVISIRGEEEPSNARIEGMVEGVAIESNYSECSSAADRNASCCRSLAIAFTIVLLVRHLFAVLTNGTEDYPFTLLTVIILKASGIIIPMYIVIKIIGVIQNSIQHYQDSYYDTSMSDEDDESETQHNANLRHS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0534 218 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Apr4g0534 218 SUPERFAMILY RING/U-box 18 72 - -
Apr4g0534 218 MobiDBLite consensus disorder prediction 197 218 - -
Apr4g0534 218 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 208 - -
Apr4g0534 218 SMART ringv_2 19 68 IPR011016 GO:0008270
Apr4g0534 218 CDD RING_CH-C4HC3_MARCH 20 67 - -
Apr4g0534 218 Pfam Protein of unknown function (DUF3675) 73 181 IPR022143 -
Apr4g0534 218 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Apr4g0534 218 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 208 IPR033275 -
Apr4g0534 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 77 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0534 Apr-Chr4 4443906 4447562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0534 20 67 C3H Transcription Factor Family AT5G05830 40.385 4.11e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0534 - - gmx:100802379 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0534 4 4443906 4447562 Apr8g0078 8 636768 639596 PCT