Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0524 ATGTCTGATGAGATTCAAACCTCAGGACCGAAACTGTTTGGTTTCCCACTAACAGAGCAAGAAGAATTTGCAGATACAAAATACGATGTTGGAGAGGACAGAAAATTCAGATGCCACTATTGCAGGCGAGTATTCGCTAACTCCCAGGCCTTAGGGGGCCACCAAAACGCTCACAAGAAAGAGCGTCAAAGAGCAAGGCGTTTCCAAATCCACACTCATAGACGATCCACACCTCTCCTCACACTACCCTCCATTTACTTACAACAACAACAACAACAACAACAACCCCCTTCACCCCCCACCACTCATCTTCCTATCACTCTCCACCACTTTCCATCACGCCCCATTTTCCTTCCTTCCTCCTCCTATCGTTCTACCACTCCTTGCTTTCCTTTTCAGCTTTATGCCTCCCCCACTGCACTCCAGTCTCCTCCTATTGTCCCTCATTTTTCTCCAGACTCGCATGTTGGTGTTAATGTTGATGTACATCTCAAATTATCCCTGTCAGATTGA 513 0.4659 MSDEIQTSGPKLFGFPLTEQEEFADTKYDVGEDRKFRCHYCRRVFANSQALGGHQNAHKKERQRARRFQIHTHRRSTPLLTLPSIYLQQQQQQQQPPSPPTTHLPITLHHFPSRPIFLPSSSYRSTTPCFPFQLYASPTALQSPPIVPHFSPDSHVGVNVDVHLKLSLSD* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0524 170 Gene3D Classic Zinc Finger 21 96 - -
Apr4g0524 170 PANTHER ZINC FINGER PROTEIN 5 2 169 IPR044299 GO:0010090
Apr4g0524 170 PANTHER ZINC FINGER PROTEIN 6-LIKE 2 169 - -
Apr4g0524 170 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Apr4g0524 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Apr4g0524 170 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0524 Apr-Chr4 4353765 4354277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0524 6 70 C2H2 Transcription Factor Family AT1G67030 52.778 1.26e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g0524 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0524 - - aprc:113861015 324.324