Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0516 ATGTCCACCGATTCCCACGCCGCTCTTAATATCAATCCCAAAGGTCTCCTCTGCAATGCTGCCGCCGGTGCAGCCGCCGGAGTTATTGCTGCTACGTTTGTGTGTCCTTTAGATGTCATCAAAACTAGGTTTCAGGTTCATGGTCTACCGCAGCTCGCCAAAGGAAATGTTAAAGGCAGCATAATTGTTGCTAGTTTGGAACAAATATTTCAGAAGGAGGGGTTACGTGGCATGTACCGTGGCCTTGCTCCCACTGTTCTGGCCTTACTTCCAAACTGGGCGGTTTATTTTACAATGTATGAGCAGCTCAAGAGCCTTCTTCATTCTGATGATGAAAGCCACCATCTTCCAATTGGAGCTAACATGATAGCTGCTTCTGGTGCTGGAGCTGCAACTACAATGTTTACAAATCCCCTTTGGGTTGTCAAGACTAGACTCCAAACCCAAGGAATGAGACCTGGTGTTGTACCATATAGGAGCACGCTATCTGCATTAAGAAGAATTGCACATGAGGAGGGCATTCGGGGGTTATACAGTGGCCTTGTACCTGCTCTAGCTGGTATTAGTCATGTTGCCATCCAATTTCCAACTTATGAGACAATAAAATTTTATTTGGCAAATCAAGATGACTCAGCAATGGATAAACTTGGAGCACGTGATGTTGCAATTGCCTCATCAGTCTCCAAAATTTTTGCTTCCACATTGACATATCCTCATGAGGTTGTACGTTCCAGACTGCAAGAACAAGGGCATCATTCAGAGAAACGGTACTCTGGTGTGATTGACTGTATTAGAAAGGTTTTTCAACAGGAAGGTGTATCAGGCTTTTACCGAGGTTGTGCCACCAACCTTCTAAGGACAACACCAGCTGCTGTCATCACATTCACGAGCTTCGAAATGATACACCGATTTCTTGTTTCACTTTTTCCTTCTGATCCACAGGGTCATATTTTGCGATGA 960 0.4479 MSTDSHAALNINPKGLLCNAAAGAAAGVIAATFVCPLDVIKTRFQVHGLPQLAKGNVKGSIIVASLEQIFQKEGLRGMYRGLAPTVLALLPNWAVYFTMYEQLKSLLHSDDESHHLPIGANMIAASGAGAATTMFTNPLWVVKTRLQTQGMRPGVVPYRSTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYETIKFYLANQDDSAMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCIRKVFQQEGVSGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLFPSDPQGHILR* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0516 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Apr4g0516 319 Gene3D Mitochondrial carrier domain 113 307 IPR023395 -
Apr4g0516 319 Gene3D Mitochondrial carrier domain 3 112 IPR023395 -
Apr4g0516 319 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 317 IPR044712 GO:0006862|GO:0055085
Apr4g0516 319 Pfam Mitochondrial carrier protein 222 306 IPR018108 -
Apr4g0516 319 Pfam Mitochondrial carrier protein 15 109 IPR018108 -
Apr4g0516 319 Pfam Mitochondrial carrier protein 116 207 IPR018108 -
Apr4g0516 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 304 IPR018108 -
Apr4g0516 319 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Apr4g0516 319 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Apr4g0516 319 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085
Apr4g0516 319 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085
Apr4g0516 319 PRINTS Mitochondrial carrier protein signature 225 247 IPR002067 GO:0055085
Apr4g0516 319 SUPERFAMILY Mitochondrial carrier 15 300 IPR023395 -
Apr4g0516 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 106 IPR018108 -
Apr4g0516 319 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0516 Apr-Chr4 4294914 4299387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0516 1 318 Chloroplast and Mitochondria Gene Families AT2G47490 77.044 4.22e-168 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0516 K15115 - gmx:100500213 575.089