Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0510 ATGTGTGGCGGTGCAATCATCGCTGAGTTCATCCCTCGCCATCGTTCTCGCCACCTCACAGCCTCCGAGCTCTGGCCCAACACATTCGAAGCACGGCAACAACAACCCCCTCTCAAACCAGTTAGGGATGGGCCAGCCCCCCCAAAGAAGCAGAGAAAAAACCTGTACAGAGGGATAAGGCAGAGACCATGGGGCAAATGGGCTGCAGAGATTCGTGATCCAAGAAAAGGGGTTCGTGTCTGGCTTGGCACCTTCAACACTGCCGAAGAAGCTGCTAGAGCCTACGACAGAGAAGCCCGAATAATCCGTGGCAAAAAAGCCAAAGTCAATTTCCCCAATGAAGATCAATATTCCATTAAAGCTCCAGTTATTCCACCACCCCATCAAAATCCTCCCTTCTATCAACAACAAGAATACGTTAGCAAAAGTCTCAACTTGGAGTTCGGTTATGATCTGAACCAAGCTGGGCCAGATTTTGCTTCTGTTGATGAGAGATGTGGGTATGGATCTGCGTCGGGGTCTGAAGGTACTTACTCCACGTCGGAGTTACTGGGTGAGGAAACAGAAGTGAAAGTGTTGGGGGTTGCAAGTGAAGAGGAAAAGAACAAGGTGGATAAGCTTTCGGAGGAGTTGATGGCGTACGAGAACTACATGAGGTTTTATCAGATTCCGTATTATGATGCCCAGTTGGCTGCGCCTAATAATACCGTTCAGGAAAACGTCGTTGGGGATCTTTGGAACTTTGATGCTGATGCTGAGGCTGTTACTTCTTCTTCAGCTCTCTGA 786 0.4885 MCGGAIIAEFIPRHRSRHLTASELWPNTFEARQQQPPLKPVRDGPAPPKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARIIRGKKAKVNFPNEDQYSIKAPVIPPPHQNPPFYQQQEYVSKSLNLEFGYDLNQAGPDFASVDERCGYGSASGSEGTYSTSELLGEETEVKVLGVASEEEKNKVDKLSEELMAYENYMRFYQIPYYDAQLAAPNNTVQENVVGDLWNFDADAEAVTSSSAL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0510 261 CDD AP2 56 113 IPR001471 GO:0003700|GO:0006355
Apr4g0510 261 PANTHER DNA-BINDING DOMAIN 48 130 IPR044808 GO:0003700|GO:0009873
Apr4g0510 261 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Apr4g0510 261 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Apr4g0510 261 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Apr4g0510 261 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Apr4g0510 261 Coils Coil 197 217 - -
Apr4g0510 261 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Apr4g0510 261 MobiDBLite consensus disorder prediction 31 52 - -
Apr4g0510 261 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Apr4g0510 261 Pfam AP2 domain 56 97 IPR001471 GO:0003700|GO:0006355
Apr4g0510 261 PANTHER EREBP TRANSCRIPTION FACTOR 48 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0510 Apr-Chr4 4251691 4252639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0510 201 248 AP2-EREBP Transcription Factor Family AT2G47520 47.917 8.45e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr4g0510 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0510 K09286 - gmx:100780763 299.286