Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0505 ATGCATAGCTCCATTAGAAGAAGAACACCACCCTTGCTATCTCATCATGTACCCATTCTCTCCATGGTTTTTGTGCTACTCTGTTCTTCGGCAAAAGCAACAACAAGCCTCCAAGAAACTCACGTCCATTACCAAAAGCACATTCAAGTAGCTAACTCCACATGCGAAGGAACACTTTACCCAGATCTCTGTGTCTCAACCTTAGCATCCTTCCCAGATCTTACCTCCAAATCTGTCCCACAAATTATTTGTTCCGTCGTGAACCATACCATATACGAGGTCAGATTGTCATCCTCAAACTGCAGCGGTCTCCGAAGTAAGCTCCGAGGTCTCCCAACACTCGAACAAAGAGCTCTTGATGACTGTCTCAATTTGTTCGATGCCACCATTGTGGAGCTCAAAACCACCATCGCTGATCTGTCCCACGGCACAATAGGCTCGGAAAGGAACCAGCATTCTAGGACTCTGCTAAGTGGCGCAATGACCAATTTGTACACTTGTTTGGATGGTTTTGCTTACGAGAAAGGAAATGTGAGAGAGAAGATCGAGGGGAAGTTGCATGAGATTTCTCATCACGTTAGTAACGCACTGGCCATGATGAAGAAAGTGCCTGCAGCGAAGAAACCTTCCAAGAGTGAGACATTCCCCGAATATGGTAAGATGAAAGACGGGTTCCCATTGTGGGTGTCCCCCAAAGACCGAAAGTTGCTGCAAGCTGCTGTGAATGAGACCAAGTTTGATCTTGTTGTGGCCAAAGATGGCACTGGTAACTTCGCCACTATAGGGGAAGCAGTGGCCGCAGCTCCAAACTCTAGCACAACAAGATTTGTGATACACATAAAAGCCGGGGCATACTTCGAGAATGTGGAGGTAACCAGGAAGAAGACCAATCTGATGCTGGTCGGAGATGGAATTGGAAAGACTGTGGTGAAGGCCAGTAGGAATGTAGTGGACGGGTGGACCACTTTCCAATCAGCTACTGTCGCTGTGGTGGGAGACGGATTCATAGCGAAGGGTATAACCTTTGAGAACTATGCTGGGCCAAGCAAACACCAAGCTGTGGCACTGAGGAGCGGTGCTGACTTCTCAGCCTTCTACAAATGCAGCTTTGTTGGCTACCAAGACACTCTCTATGTCCACTCCCTCCGTCAATTCTTCCGCGATTGTGACATTTATGGCACCATAGACTTCATCTTTGGCAATGCAGCAGTGGTCCTACAAAACTGTAACTTATACGCACGCAAGCCATTAGAAAACCAGAAGAACCTGTTCACTGCACAAGGCAGAGAAGACCCCAACCAAAACACTGGCATTTCCATCTTGAACTGCAAGGTTGCATCTTCTGCTGATTTGACCCCAGTTAAAACTTCGTTCAAGAATTACTTGGGTCGCCCTTGGAAAAGGTATTCAAGAACTGTTTATCTAAATTCTTACATGGAAGATCTTATAGACCCAGCTGGGTGGTTGGAATGGAATGGCACGTTTGCATTGGACACATTGTATTATGCGGAGTACAACAATAGGGGTCCAGGTTCGAATACAAGTGGCAGAGTTACGTGGCCTGGTTATAGGGTCCTCAAGAACGCCACCGAGGCAAGACAGTTCACAGTTGGACAGTTCATTCAAGGCGATGCATGGTTGGACTCCACCAACATTCCATTCTTCCCTGATTTAAGTTGA 1680 0.4696 MHSSIRRRTPPLLSHHVPILSMVFVLLCSSAKATTSLQETHVHYQKHIQVANSTCEGTLYPDLCVSTLASFPDLTSKSVPQIICSVVNHTIYEVRLSSSNCSGLRSKLRGLPTLEQRALDDCLNLFDATIVELKTTIADLSHGTIGSERNQHSRTLLSGAMTNLYTCLDGFAYEKGNVREKIEGKLHEISHHVSNALAMMKKVPAAKKPSKSETFPEYGKMKDGFPLWVSPKDRKLLQAAVNETKFDLVVAKDGTGNFATIGEAVAAAPNSSTTRFVIHIKAGAYFENVEVTRKKTNLMLVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIAKGITFENYAGPSKHQAVALRSGADFSAFYKCSFVGYQDTLYVHSLRQFFRDCDIYGTIDFIFGNAAVVLQNCNLYARKPLENQKNLFTAQGREDPNQNTGISILNCKVASSADLTPVKTSFKNYLGRPWKRYSRTVYLNSYMEDLIDPAGWLEWNGTFALDTLYYAEYNNRGPGSNTSGRVTWPGYRVLKNATEARQFTVGQFIQGDAWLDSTNIPFFPDLS* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0505 559 Pfam Plant invertase/pectin methylesterase inhibitor 52 199 IPR006501 GO:0004857
Apr4g0505 559 PANTHER PECTINESTERASE 20 555 - -
Apr4g0505 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 203 IPR035513 -
Apr4g0505 559 Pfam Pectinesterase 247 544 IPR000070 GO:0030599|GO:0042545
Apr4g0505 559 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Apr4g0505 559 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 202 IPR006501 GO:0004857
Apr4g0505 559 Gene3D - 241 558 IPR012334 -
Apr4g0505 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 204 IPR035513 -
Apr4g0505 559 CDD PMEI-like_3 53 205 - -
Apr4g0505 559 SMART PMEI_2 46 199 IPR006501 GO:0004857
Apr4g0505 559 SUPERFAMILY Pectin lyase-like 245 556 IPR011050 -
Apr4g0505 559 PANTHER PECTINESTERASE 20 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0505 Apr-Chr4 4206864 4210901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0505 75 558 Carbohydrate Esterase AT4G02320 54.000 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0505 K01051 - gmx:100813592 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0505 4 4206864 4210901 Apr8g0971 8 11676283 11684302 PCT