Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0504 ATGGCTTCCAAGCTTTCCTATTCCCTCTCAACAATGTTAACATTTCTCGTTCTCCTACCCTTATTTGTCTCCATATCTTTCGCAGACACCGTTCCCAATCCCACCACTCCAGTCTCTCCCGGAACCGCATGCAAATCCACCCCAGACCCATCCTATTGCAAATCCGTTCTCCCTCCCCGAAACGGCAACGTTTACGATTATGGAAGGTTCTCCGTGAAACAATCACTCTCACAGGCTCGCAAGTTCTTGAACCTTATTGATAAATATCTCGCTGGCCGCTCTACTCTATCCGCCACAGCAATTCGTGCGCTCCAAGATTGCCGTACTCTTGGGGAACTCAACTTCGATTTCCTTTCGAGTTCTTTCCAAACAGTGAACAAAACAACGAGGTTTCTTCCTAGTTTTCAAGCTGACGATATCCAAACCTTACTCAGTGCCATTCTCACCAACCAACAAACGTGTTTGGATGGCCTCACAGACACCGCTTCAGCTTGGAGAGTCAGAAATGGACTCACTGTCCCACTTTCCAATGACACCAAGCTCTACAGTGTCTCTCTCGCGCTATTCACTAAAGGTTGGGTTCCCAAAACCAAAACCAATGCAAATCACCCAACCACGAAACAACTTGGATTCCGAAACGGGCGTTTGCCGCTTAAGATGTCTAGCAGAACCCGCGCGATCTACGAGTCTGTGAGTAGAAGAAAGCTCCTTCAGAGCTCGGTGGGTAACCAGGTTTTGGTGAGAGATGTTGTGACGGTGAGCCAAGATGGAAGTGGAAACTTCACCACAATCAACGACGCCATTGCCGCAGCTCCTAACAAATCTGTCTCCACCGATGGGTACTTCCTTATCTATGTAACTGCCGGTGTTTATGAGGAATATGTGTCCATTGATAAGAGGAAGACGTACTTGATGATGATCGGAGATGGTATCAACAAAACAATTATCACCGGCAACCGTAGCGTCATCGATGGGTGGACTACCTTCAGCTCCGCAACTTTCGCGGTAGTTGGTCAAGGATTCGTGGGTGTGAATATGACAATCCGTAACACTGCGGGGGCAGCAAAGCACCAAGCAGTAGCAATTCGAAACGGAGCAGATTTGTCCACGTTTTACAGTTGTAGGTTCGAGGGGTACCAAGACACATTATACGTACATTCCCTAAGACAATTCTACAGGGAATGTGACATCTACGGTACAGTAGATTTCATATTCGGAAACGCTAAGGTCGTATTCCAAAGTTGCAACATGTATCCTCGTCTCCCCATGAGTGGTCAATTCAACGCCATAACCGCACAAGGTAGAACCGACCCGAATCAAGACACGGGTATTTCTATCCACAACTGTACCATTAGAGCAGCTGATGACTTAGCTGCTAGTAACGGTGCTGCTGAAACGTATTTGGGAAGGCCATGGAAGGAGTATTCGAGAACGATTTATATGCAAACTTTGATGGACAGTGTGGTCAACGCTGCTGGGTGGCGTGAATGGGATGGTAATTTTGCATTGAGCACTTTGTATTACGCAGAGTTCAACAACAGTGGACCAGGATCCAACACTGGTAATAGAGTGACGTGGCCCGGTTACCATTTGATTAATGCCACCGATGCAGCTAACTTTACAGTGTCCAGTTTCTTGCTTGGTGATGATTGGTTGCCCCAGACAGGAGTGGCTTACACCAATAACTTGATATAG 1695 0.4714 MASKLSYSLSTMLTFLVLLPLFVSISFADTVPNPTTPVSPGTACKSTPDPSYCKSVLPPRNGNVYDYGRFSVKQSLSQARKFLNLIDKYLAGRSTLSATAIRALQDCRTLGELNFDFLSSSFQTVNKTTRFLPSFQADDIQTLLSAILTNQQTCLDGLTDTASAWRVRNGLTVPLSNDTKLYSVSLALFTKGWVPKTKTNANHPTTKQLGFRNGRLPLKMSSRTRAIYESVSRRKLLQSSVGNQVLVRDVVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGVYEEYVSIDKRKTYLMMIGDGINKTIITGNRSVIDGWTTFSSATFAVVGQGFVGVNMTIRNTAGAAKHQAVAIRNGADLSTFYSCRFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAKVVFQSCNMYPRLPMSGQFNAITAQGRTDPNQDTGISIHNCTIRAADDLAASNGAAETYLGRPWKEYSRTIYMQTLMDSVVNAAGWREWDGNFALSTLYYAEFNNSGPGSNTGNRVTWPGYHLINATDAANFTVSSFLLGDDWLPQTGVAYTNNLI* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0504 564 Pfam Plant invertase/pectin methylesterase inhibitor 42 188 IPR006501 GO:0004857
Apr4g0504 564 Pfam Pectinesterase 251 549 IPR000070 GO:0030599|GO:0042545
Apr4g0504 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 190 IPR006501 GO:0004857
Apr4g0504 564 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Apr4g0504 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 191 IPR035513 -
Apr4g0504 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 191 IPR035513 -
Apr4g0504 564 PANTHER PECTINESTERASE 23 562 - -
Apr4g0504 564 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 23 562 - -
Apr4g0504 564 Gene3D - 245 563 IPR012334 -
Apr4g0504 564 CDD PMEI-like_3 42 193 - -
Apr4g0504 564 SUPERFAMILY Pectin lyase-like 248 560 IPR011050 -
Apr4g0504 564 SMART PMEI_2 35 188 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0504 Apr-Chr4 4184921 4187073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0504 16 564 Carbohydrate Esterase AT4G02330 63.139 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0504 K01051 - gmx:100800971 1010.36