Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0502 ATGATTATGGACCCTGACGTTGAATCAAAGTATGCCCACAACGCCAAGGTCATGGTGGGCACTGCCATTCTTCTCTTCATAATCATACTCCTTATTGTTTTCTTACACGCCTATCTCCGCTTCTGCCGCCGTCGCCGTCGCCGTCTTCCCTCTCCTTCGCTTCCCACTAATTCCTCTTTCAACCACCCATCCCTTCACCCCTCCGTTCTCAAATCCCTTCCCACGTTCACTTTCTCGGCCGCCACCCACCGCGCTCTTCACGACTGCGCCGTGTGCTTGTCGGAGTTCGCTGACGGCGACGAAGGGCGCGTGCTTCCAAACTGCAACCACGCTTTCCACTCTCATTGCATCGACACGTGGTTCGTCTCTCACTCGAACTGTCCTCTCTGCCGAACCCTGGTTCAACCGGCGACGGCTTGCTCTGGCGCTGAACCGGGTTCTGTTTCGGTTTTAGAAGCGGGGGAGGGTTCTTGCTCCTCGTCTTTGCCTGCACCCATAGGGTGTCCGAGAAAGCCGTTGCATATAATCGTGGAGCAACCCGAGGTGGAAAGAGAGTCGGATCCTGTAACCGGAGATCAAGGGTTGAGATGGTCCTTGAAGAGGTTTTGCAGCGTCTAA 618 0.5518 MIMDPDVESKYAHNAKVMVGTAILLFIIILLIVFLHAYLRFCRRRRRRLPSPSLPTNSSFNHPSLHPSVLKSLPTFTFSAATHRALHDCAVCLSEFADGDEGRVLPNCNHAFHSHCIDTWFVSHSNCPLCRTLVQPATACSGAEPGSVSVLEAGEGSCSSSLPAPIGCPRKPLHIIVEQPEVERESDPVTGDQGLRWSLKRFCSV* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0502 205 SMART ring_2 89 130 IPR001841 -
Apr4g0502 205 CDD RING-H2_PA-TM-RING 88 131 - -
Apr4g0502 205 Pfam Ring finger domain 88 131 IPR001841 -
Apr4g0502 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 142 - -
Apr4g0502 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 137 IPR013083 -
Apr4g0502 205 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Apr4g0502 205 PANTHER RING-H2 FINGER PROTEIN ATL64 8 142 - -
Apr4g0502 205 SUPERFAMILY RING/U-box 69 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0502 Apr-Chr4 4178916 4181874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0502 11 135 Rapid Response to Elicitors AT3G16720 45.775 1.49e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0502 - - gmx:102665377 304.679