Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0496 ATGTCTGAAGTGAATGCGGGTGCTGAAATCCCACAAAACAATACAATCTACATCAACAACCTTAACGAAAAGATTAAGATTGATGAGTTGAAGAAGTCTTTGCACGCTGTTTTCACTCAGTTTGGGAAGATACTTGAGGTGTTAGCTTTCAAACCCCTCAAGCACAAGGGTCAAGCCTGGGTGGTCTTTGAGGATGTCTCTTCTGCTTCCAATGCACTTAGGCAAATGCAAGGTTTCCCCTTCTATGATAAGCCCATGAGAATACAATATGCAAAGACTAAATCTGACATAATAGCAAAAGCGGATGGTACTTTTGTTCCTAGGGAAAAGCGTAAGAGGCATGATGACAAAGGTAAAAAACGGAAGGACCAACATGATGCTAATTTAGCTGGAATGGGCCTAAATCCAGCTTATGCTGGTGCTTATGGTGCAACACCTGCTATGCCTTATCCAGGTGGCGCAAAATCTATGGTACCTGAGGCTCCTGCACCGCCAAATAATATTCTCTTTATTCAGAATCTTCCCAATGAAACAACTCCCATGATGCTACAAATGCTCTTTCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGAATTGCCTTTGTGGAATATGGAGATGAGATGCAGTCCACTGTGGCTATGCAGGCGCTGCAAGGTTTCAAGATTACCCCCCAAAACCCAATGTTGATAACTTACGCCAAGAAATAA 726 0.4242 MSEVNAGAEIPQNNTIYINNLNEKIKIDELKKSLHAVFTQFGKILEVLAFKPLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQHDANLAGMGLNPAYAGAYGATPAMPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0496 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Apr4g0496 241 SMART rrm1_1 168 237 IPR000504 GO:0003723
Apr4g0496 241 SMART rrm1_1 15 89 IPR000504 GO:0003723
Apr4g0496 241 CDD RRM1_U1A_like 15 92 - -
Apr4g0496 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 241 IPR000504 GO:0003723
Apr4g0496 241 CDD RRM2_U1A_like 165 237 - -
Apr4g0496 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 6 241 - -
Apr4g0496 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Apr4g0496 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 228 IPR000504 GO:0003723
Apr4g0496 241 Gene3D - 155 241 IPR012677 -
Apr4g0496 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 6 241 - -
Apr4g0496 241 SUPERFAMILY RNA-binding domain, RBD 12 230 IPR035979 GO:0003676
Apr4g0496 241 MobiDBLite consensus disorder prediction 106 129 - -
Apr4g0496 241 Gene3D - 8 102 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0496 Apr-Chr4 4148369 4151153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0496 16 137 Eukaryotic Initiation Factors Gene Family AT4G34110 28.800 6.74e-06 44.7