Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr4g0492 | ATGGCGTCTGGTTGGGGAATCACCGGAAACAAAGGTCGCTGCTACGATTTCTGGATGGACTTCAGCGAGTGCATGTCTCGCTGCCGAGAGCCCAAAGACTGTGCTCTCCTCCGCGAAGACTACCTCGAGTGCCTCCACCATCCCAAAGAGTTCCAACGACGAAACCGGATCTACAAGGAGGAGCAGCGCAAACTAAGAGCTGCTGCCAGGAAAGGTCAGGAGGATGGGGTTGCTAATGAACATCATTATACCTTTTTATCATACCATACGACACAAATCCTTTTCCCTCTCGCTCCACAAAAGAAAATGAGTAGACGTGCGAGCAGAACTGTGTACGTTGGGAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTCATGAAGTATGGACACATTACTCACATTGACCTAAAAGTTCCCCCAAGACCACCTGGTTATGCATTCGTAGAGTTTGAAGATGCTCAAGATGCAGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCTCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGATATAGTAGTCACAGCAATGGGCGGGCTGGACGTGGAGTATCTAGGCGCTCTGAGTACCGTGTTCTAGTCACTGGATTGCCTTCTTCTGCATCGTGGCAGGATCTTAAGGATCACATGCGGAAGGCTGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTGCCAGGGCTTATATTCGCGTTAGGGAATATGATTCAAGGAGGGACTCCTCTAGAAGTCCTAGTCGCGGCCCATCTCATTCTAGAGGAAGAAGCTACAGCCGCAGTCGCAGCCGTAGTTACAGTCGTGGTCGAAGCCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCAGCAAAATCTCCATCAAGATCTCCCTCTCGTTCTCGCTCAAGATCAAGGTCCCGTTCGTTATCAGGATCACGGTCAAGGTCCAGGTCTCCATTGCCTTCACATAATAAAAGCCCCAAAAAGCGCAGTGCAAGCAGGAGCCCAAGTAGGAGTAGGAGCAAGAGTTTGTCCCGGTGA | 1188 | 0.4865 | MASGWGITGNKGRCYDFWMDFSECMSRCREPKDCALLREDYLECLHHPKEFQRRNRIYKEEQRKLRAAARKGQEDGVANEHHYTFLSYHTTQILFPLAPQKKMSRRASRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFARAYIRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSYSRGRSQSKSPKGKSSQRSPAKSPSRSPSRSRSRSRSRSLSGSRSRSRSPLPSHNKSPKKRSASRSPSRSRSKSLSR* | 396 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr4g0492 | 395 | PANTHER | PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN | 105 | 387 | - | - | |
Apr4g0492 | 395 | Gene3D | - | 97 | 212 | IPR012677 | - | |
Apr4g0492 | 395 | MobiDBLite | consensus disorder prediction | 371 | 385 | - | - | |
Apr4g0492 | 395 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 109 | 184 | IPR000504 | GO:0003723 | |
Apr4g0492 | 395 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 105 | 387 | - | - | |
Apr4g0492 | 395 | Gene3D | - | 213 | 290 | IPR012677 | - | |
Apr4g0492 | 395 | MobiDBLite | consensus disorder prediction | 175 | 208 | - | - | |
Apr4g0492 | 395 | SMART | rrm1_1 | 110 | 180 | IPR000504 | GO:0003723 | |
Apr4g0492 | 395 | SMART | rrm1_1 | 214 | 283 | IPR000504 | GO:0003723 | |
Apr4g0492 | 395 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 111 | 178 | IPR000504 | GO:0003723 | |
Apr4g0492 | 395 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 215 | 277 | IPR000504 | GO:0003723 | |
Apr4g0492 | 395 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 291 | IPR000504 | GO:0003723 | |
Apr4g0492 | 395 | MobiDBLite | consensus disorder prediction | 289 | 395 | - | - | |
Apr4g0492 | 395 | CDD | RRM1_SF2_plant_like | 110 | 180 | - | - | |
Apr4g0492 | 395 | CDD | RRM2_SF2_plant_like | 213 | 288 | - | - | |
Apr4g0492 | 395 | SUPERFAMILY | RNA-binding domain, RBD | 108 | 281 | IPR035979 | GO:0003676 | |
Apr4g0492 | 395 | MobiDBLite | consensus disorder prediction | 317 | 346 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr4g0492 | Apr-Chr4 | 4111754 | 4121957 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr4g0492 | 111 | 303 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 27.103 | 8.77e-06 | 45.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr4g0492 | K12890 | - | gmx:100789847 | 362.459 |