Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0492 ATGGCGTCTGGTTGGGGAATCACCGGAAACAAAGGTCGCTGCTACGATTTCTGGATGGACTTCAGCGAGTGCATGTCTCGCTGCCGAGAGCCCAAAGACTGTGCTCTCCTCCGCGAAGACTACCTCGAGTGCCTCCACCATCCCAAAGAGTTCCAACGACGAAACCGGATCTACAAGGAGGAGCAGCGCAAACTAAGAGCTGCTGCCAGGAAAGGTCAGGAGGATGGGGTTGCTAATGAACATCATTATACCTTTTTATCATACCATACGACACAAATCCTTTTCCCTCTCGCTCCACAAAAGAAAATGAGTAGACGTGCGAGCAGAACTGTGTACGTTGGGAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTCATGAAGTATGGACACATTACTCACATTGACCTAAAAGTTCCCCCAAGACCACCTGGTTATGCATTCGTAGAGTTTGAAGATGCTCAAGATGCAGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCTCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGATATAGTAGTCACAGCAATGGGCGGGCTGGACGTGGAGTATCTAGGCGCTCTGAGTACCGTGTTCTAGTCACTGGATTGCCTTCTTCTGCATCGTGGCAGGATCTTAAGGATCACATGCGGAAGGCTGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTGCCAGGGCTTATATTCGCGTTAGGGAATATGATTCAAGGAGGGACTCCTCTAGAAGTCCTAGTCGCGGCCCATCTCATTCTAGAGGAAGAAGCTACAGCCGCAGTCGCAGCCGTAGTTACAGTCGTGGTCGAAGCCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCAGCAAAATCTCCATCAAGATCTCCCTCTCGTTCTCGCTCAAGATCAAGGTCCCGTTCGTTATCAGGATCACGGTCAAGGTCCAGGTCTCCATTGCCTTCACATAATAAAAGCCCCAAAAAGCGCAGTGCAAGCAGGAGCCCAAGTAGGAGTAGGAGCAAGAGTTTGTCCCGGTGA 1188 0.4865 MASGWGITGNKGRCYDFWMDFSECMSRCREPKDCALLREDYLECLHHPKEFQRRNRIYKEEQRKLRAAARKGQEDGVANEHHYTFLSYHTTQILFPLAPQKKMSRRASRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFARAYIRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSYSRGRSQSKSPKGKSSQRSPAKSPSRSPSRSRSRSRSRSLSGSRSRSRSPLPSHNKSPKKRSASRSPSRSRSKSLSR* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0492 395 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 105 387 - -
Apr4g0492 395 Gene3D - 97 212 IPR012677 -
Apr4g0492 395 MobiDBLite consensus disorder prediction 371 385 - -
Apr4g0492 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 184 IPR000504 GO:0003723
Apr4g0492 395 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 105 387 - -
Apr4g0492 395 Gene3D - 213 290 IPR012677 -
Apr4g0492 395 MobiDBLite consensus disorder prediction 175 208 - -
Apr4g0492 395 SMART rrm1_1 110 180 IPR000504 GO:0003723
Apr4g0492 395 SMART rrm1_1 214 283 IPR000504 GO:0003723
Apr4g0492 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 178 IPR000504 GO:0003723
Apr4g0492 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 277 IPR000504 GO:0003723
Apr4g0492 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Apr4g0492 395 MobiDBLite consensus disorder prediction 289 395 - -
Apr4g0492 395 CDD RRM1_SF2_plant_like 110 180 - -
Apr4g0492 395 CDD RRM2_SF2_plant_like 213 288 - -
Apr4g0492 395 SUPERFAMILY RNA-binding domain, RBD 108 281 IPR035979 GO:0003676
Apr4g0492 395 MobiDBLite consensus disorder prediction 317 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0492 Apr-Chr4 4111754 4121957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0492 111 303 Eukaryotic Initiation Factors Gene Family AT4G34110 27.103 8.77e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0492 K12890 - gmx:100789847 362.459