Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0488 ATGTTCTCCTCATCTCTCTCATGTGCTTCGCCTGTGAAACAAAACTCAACTCTGTTTCAATGGCTGAGATTCATTTTCCTTTCTCCCTGTCCTCAGAGAGTTCTCTTGTCTGCCGTTGATACTCTACTCTTGCTCTTTCTCTTTGTGTTTGCTGTCACAAAGCTCCGTAAAAGGTTCACCTCTCATGGCCGTTCCAACAACGACCTCAACAAGCCTTTCATTAGAAACAACATATCCACTTTCAGAACTACTCTGTGGTTTAAGTTAACTTTGACTGTAACGGTTGTTTTGGCTGTAGTTTACACCGTTGCTTGCGTTCTCGTCTTTAGCAGTTCCACCAACGTGCCGTGGAAGCAAGTTGATGAAGCTTTTTGGATCGTCCAGGCCTTAACACATGTAGTGCTTGCAGTGTTGATCATTCACGAGAAAAAATTCGAAGCTGTAACACACCCCCTGTCCGTTCGAGTTTACTGGGTTGCGAATTTCGTTGTCATTTCCTTGTTCACGGTTTCTGGGGTTGTACGTTTTGTGTCTGTGGATGGAGCCAAAAGCTTCGTCATTGAAGTGGATGACGTGGTCTCTTTTATTTCACTCCCTCTGTCATTGTTTCTTCTTTTTGTGGCGGTTAAAGGAGCCACTGGTATTGTGTTGTCGACAGAAGAAACAAAGTCCCTTGTTGACGAGGAAACGAGGTTTTATGAAACAAAAGCCGAGGTTACTGGCTTTGCTTCAGCTTCTGTACTATCCAAGGCATTTTGGTGTTGGATAAACCCTTTGTTGATTAAAGGGTATAAGTCACCACTGAAGATTGATGATATTCCAACACTTTCCCCAGAGCACAGAGTCGAGAGGATGTCTTCTCTGTTTGAATCAAAATGGCCAAAATCAAACGAGAGGTCGAAGCATCCAGTTAGAATCACATTGCTTCGGTGCTTTTGGAAGGAGTTAGCCATCACTGCCATCCTTGCAATTATTAGGCTCTGTGTCATGTTTGTGGGCCCAGTTCTCATACAAAGCTTTGTAAATTACACGTCAGGGAACAGAAGCTCTGTGTATGAAGGGTACTATCTCGTGTTGATTCTTCTTGTTGCTAAGTTCATAGAAGTGATGACCACTCACCATTTCAACTTCACCGCTCAGAAAATTGGGATGCTCATAAGGTGCACTCTTATACCTTCTTTGTACAAAAAGGGGTTGATGCTATCATTCTCAGCTCGGCAGGACCATGGTGTGGGTACCATTGTGAATTACATGGCTGTTGATATTCAGCAACTTTCTGATATGATGCTTCAGTTGAATGCTGTGTGGATGATGCCACTTCAAGTTGGTATTGGTTTATTTCTGCTTTACAATTGTCTAGGAGCCTCAGTAGTGACTGCTTTTCTTGGTCTTCTTGGTGTTTTTGTGTTTGCTGTTTTTGGTACTCGTAGAAACAACCATTTTCAATTTAATGTGATGAAGAACCGTGACTCGAGAATGAAAGCTATGAATGAGATGCTTAATTACATGCGTGTGATAAAGTTTCAGGCTTGGGAGGAGCATTTCAATGGGAGGATTATGGGATTCCGCGGGACGGAGTTTGGGTGGCTTTCGAAGTTTATGTTCTCTATTTGTGGTAATATTGTTGTGATGTGGAGCACGCCGTTATTAGTATCAACTGTCACGTTTGGTACAGCTATTTTAATCGGAGTTCCACTTAATGCAGCCACGGTCTTCACCACAACTTCTATCTTCAAGATCTTGCAGGAGCCTATTAGGACATTCCCACAGTCTATGGTATCTCTTTCGCAAGCAATGATATCATTGGACAGGTTAGATAGGTTCATGTTGAGTCGGGAATTGTCGAATGATTCAATTGAGAGAGAGGAAGGCTGTGGTGGACAAACTGCTGTGGAAATCATAGATGGTACCTTTAGTTGGGACGATGATAGCATGCAGCAGTACTTGAAGAATGTTGATTTGGAGATCAAAAAGGGGGAGCTTACAGCAATTGTTGGGACTGTGGGTTCAGGGAAGTCATCTCTCCTCGCATCAATTCTTGGTGAGATGCACAAGATTTCTGGAAAGGTTCGGGTTTGTGGTAGTGTTGCCTATGTTGCACAAACATCTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTTGGTTTACCAATGGATAGGCGTAGGTATAATGAAGTTATCAGGGCGTGTAGCTTGGAGAAAGATTTGGAAATGATGGATTATGGAGATCAAACAGAAATTGGAGAGCGTGGTATCAACCTGAGTGGGGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTATATCAAGACTGTGATATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGCTCTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAAAGGCAAGACCGTTATTCTTGTAACACACCAAGTGGACTTCCTACATAATGTGGATCTTATATTGGTGATGAGGGACGGTAGGATAGTCCAATCAGGGAGGTACAATGATCTACTAGATTCTGGAATGGATTTTAAAGCTTTGGTAGCTGCGCATGAGACCTCGATGGAACTGGTGGAGCAGGGTGTGGTCATGCCTGGTCAAAATTTGAACAAACCAACACAATATCTAAAGGCAGTTTCTATTAACAAGGGAACCAATGGTGAATGCAGTTCTCTTGATCAGCCAGAACCTGGCAAGCGAAGTTCTAAACTCATCAAAGAAGAGGAGCGAGAAACTGGCAAAGTGAGCTTATATATCTATAAACTCTACTGCACTGAGGCTTTTGGTTGGTGGGGTGTTGCAATAGTATTGCTTCTTTCTTTGTTATGGCAAGCATCTTTGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCAGAAAAGCTTGCTAACATGTTTAACCCTTCTCTGTTCATTTCCATCTATGCAACTATTACTGCTGTTTCGGTTATTTTGGTGGTGATAAGATCCTATTTCTTTACATTCTTGTCGCTTAAAACAGCACAATCTTTCTTCACACAAATTCTTCATAGCCTCTTGCATGCACCTATGTCTTTCTTTGACACCACGCCATCTGGGAGAATTCTAAGTCGGGCATCCACTGATCAAACCAATGTTGATGTCATGCTCCCCTTGTTCCTTGGAATTGTTATTGCCATGTACATTACAGTGCTCAGCATCCTCATCATCATCTGTCAAAATTCTTGGCCAACAGCATTTTTTGTAGTGCCTCTTCTTTGGTTGAATATATGGTACCGGGGTTACTATCTTGCATCATCTCGTGAATTAACTCGCTTGGATTCAATTACCAAAGCCCCAGTTATTCATCACTTCTCTGAAAGCATTGCAGGGGTCATGACAATCCGTGCATTCAGAAAGCAAAAGAAATTCTGTGAAGAAAATCTCAAACGGGTGAATGCTAATTTGCGAATGGATTTCCACAACTACACTTCTAATGAGTGGTTAGGAGTAAGATTAGAATTGCTAGGAAGCTTTGTGTTCTGCATTTCTACTATGTTCATGATCATCTTGCCCAGCAGTATCATAAAGCCAGAAAATGTTGGTTTATCTCTCTCTTATGGATTGTCCTTAAATTCGGTATTGTTCTTTTGCGTATACATGAGTTGTTTTGTCGAAAACAAAATGGTGTCTGTTGAGAGGATAAAGCAGTTTACAAATATTCCATCGGAACCCGCTTGGAATATCAAGGATCGTTTGCCTCCTTCAAATTGGCCAGATCAAGGCAATGTAGATATCAAAGACCTGCAGGTTAGATATCGTCCAAACACCCCTCTGGTTCTTAAAGGCATCACTTTAAGCATTAGTGGAGGTGAAAAGATTGGCGTTGTTGGTCGAACTGGAAGCGGAAAATCAACTTTGATTCAAGTCTTCTTTAGGCTGGTGGAACCTTCAGGAGGGAAAATAATAATTGATAGTATTGACATATCTGTCTTGGGGCTTCATGATCTTAGATCACGGTTTGGTATCATTCCTCAAGAGCCCGTCCTTTTTGAAGGAACTGTCAGAAGCAACATTGATCCAATTGGACAGTACACAGATGATGAAATATGGAAGAGCTTGGAACGCTGTCAACTAAAAGAGGTTGTTGCTGCTAAGCCTGACAAGCTCGACTCTTTGGTGGTGGATAATGGAGAGAACTGGAGTGTGGGGCAGAGACAATTGCTTTGTCTGGGACGCGTGATGCTTAAGCGAAGCCGAGTGTTGTTTATGGATGAGGCAACTGCTTCTGTTGATTCTCAAACAGATGGTGTAATACAAAAGATCATTAGAGAGGACTTCGCAGCTTGTACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTGATAGAGTTTTAGTTGTAGATGCAGGCCATGTAAAAGAATTTGATAACCCCTCCAACTTGCTTCAGACTCAATCCCTCTTTGCAGCATTAGTTCAAGAGTACGCCAATCGTTCAGCGGGACTCTAA 4491 0.4228 MFSSSLSCASPVKQNSTLFQWLRFIFLSPCPQRVLLSAVDTLLLLFLFVFAVTKLRKRFTSHGRSNNDLNKPFIRNNISTFRTTLWFKLTLTVTVVLAVVYTVACVLVFSSSTNVPWKQVDEAFWIVQALTHVVLAVLIIHEKKFEAVTHPLSVRVYWVANFVVISLFTVSGVVRFVSVDGAKSFVIEVDDVVSFISLPLSLFLLFVAVKGATGIVLSTEETKSLVDEETRFYETKAEVTGFASASVLSKAFWCWINPLLIKGYKSPLKIDDIPTLSPEHRVERMSSLFESKWPKSNERSKHPVRITLLRCFWKELAITAILAIIRLCVMFVGPVLIQSFVNYTSGNRSSVYEGYYLVLILLVAKFIEVMTTHHFNFTAQKIGMLIRCTLIPSLYKKGLMLSFSARQDHGVGTIVNYMAVDIQQLSDMMLQLNAVWMMPLQVGIGLFLLYNCLGASVVTAFLGLLGVFVFAVFGTRRNNHFQFNVMKNRDSRMKAMNEMLNYMRVIKFQAWEEHFNGRIMGFRGTEFGWLSKFMFSICGNIVVMWSTPLLVSTVTFGTAILIGVPLNAATVFTTTSIFKILQEPIRTFPQSMVSLSQAMISLDRLDRFMLSRELSNDSIEREEGCGGQTAVEIIDGTFSWDDDSMQQYLKNVDLEIKKGELTAIVGTVGSGKSSLLASILGEMHKISGKVRVCGSVAYVAQTSWIQNGTIEENILFGLPMDRRRYNEVIRACSLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTVILVTHQVDFLHNVDLILVMRDGRIVQSGRYNDLLDSGMDFKALVAAHETSMELVEQGVVMPGQNLNKPTQYLKAVSINKGTNGECSSLDQPEPGKRSSKLIKEEERETGKVSLYIYKLYCTEAFGWWGVAIVLLLSLLWQASLMASDYWLAYETSEKLANMFNPSLFISIYATITAVSVILVVIRSYFFTFLSLKTAQSFFTQILHSLLHAPMSFFDTTPSGRILSRASTDQTNVDVMLPLFLGIVIAMYITVLSILIIICQNSWPTAFFVVPLLWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFRKQKKFCEENLKRVNANLRMDFHNYTSNEWLGVRLELLGSFVFCISTMFMIILPSSIIKPENVGLSLSYGLSLNSVLFFCVYMSCFVENKMVSVERIKQFTNIPSEPAWNIKDRLPPSNWPDQGNVDIKDLQVRYRPNTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGKIIIDSIDISVLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDDEIWKSLERCQLKEVVAAKPDKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRVLFMDEATASVDSQTDGVIQKIIREDFAACTIISIAHRIPTVMDCDRVLVVDAGHVKEFDNPSNLLQTQSLFAALVQEYANRSAGL* 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0488 1496 Gene3D - 609 867 IPR027417 -
Apr4g0488 1496 Pfam ABC transporter transmembrane region 317 584 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0488 1496 Pfam ABC transporter transmembrane region 938 1190 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0488 1496 CDD ABC_6TM_ABCC_D2 937 1229 IPR044726 GO:0140359
Apr4g0488 1496 SMART AAA_5 658 831 IPR003593 -
Apr4g0488 1496 SMART AAA_5 1280 1464 IPR003593 -
Apr4g0488 1496 CDD ABCC_MRP_domain1 631 831 - -
Apr4g0488 1496 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524
Apr4g0488 1496 Gene3D - 1238 1488 IPR027417 -
Apr4g0488 1496 Coils Coil 1125 1145 - -
Apr4g0488 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1254 1488 IPR003439 GO:0005524
Apr4g0488 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 938 1217 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0488 1496 SUPERFAMILY ABC transporter transmembrane region 934 1234 IPR036640 GO:0005524|GO:0016021
Apr4g0488 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 852 IPR027417 -
Apr4g0488 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1247 1487 IPR027417 -
Apr4g0488 1496 CDD ABC_6TM_ABCC_D1 318 605 IPR044746 GO:0140359
Apr4g0488 1496 Gene3D ABC transporter type 1, transmembrane domain 902 1235 IPR036640 GO:0005524|GO:0016021
Apr4g0488 1496 Gene3D ABC transporter type 1, transmembrane domain 292 608 IPR036640 GO:0005524|GO:0016021
Apr4g0488 1496 SUPERFAMILY ABC transporter transmembrane region 307 609 IPR036640 GO:0005524|GO:0016021
Apr4g0488 1496 MobiDBLite consensus disorder prediction 890 909 - -
Apr4g0488 1496 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 78 1495 - -
Apr4g0488 1496 Pfam ABC transporter 1271 1419 IPR003439 GO:0005524
Apr4g0488 1496 Pfam ABC transporter 649 782 IPR003439 GO:0005524
Apr4g0488 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 631 854 IPR003439 GO:0005524
Apr4g0488 1496 CDD ABCC_MRP_domain2 1252 1472 - -
Apr4g0488 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 317 597 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g0488 1496 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 78 1495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0488 Apr-Chr4 4071256 4077646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0488 587 847 Calmodulin-binding Proteins AT2G36910 30.935 6.77e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0488 - K05666 gmx:100808752 2433.29