Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0468 ATGTCAAATATTTCAGGTGATGAAGGAAGTTTCTCCTCAGGACACAATGGAGAAGAGGTTCATCAAGAAAGCCAGCAGCCACAGCTACAAAAGCACCTTCATGACTCAAGTTCAGGACCATCCAGTGCTAGCAATAGCAATGGCTCCATTAATGAACAACAAACCAAGAAGAAAAGAAACCTTCCTGGAACACCAGGCAAATACTCAAATACCCTTCACTTCAATTTTTATCCTAATGCTGAAGTTGTTGCTTTATCACCAACCACATTGATGGCAACAAATAGATTCGTCTGTGAGATTTGCAGCAAAGGTTTTCAAAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTAAGGCAAAGAACAAGCACTGAGGTGAAGAAACGGGTCTATGTGTGTCCTGAGCCATCATGTGTCCATCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATAAAAAAACATTATAGCCGCAAACATGGTGAGAAAAAATGGAAGTGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACATGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCTTTCTGTGACGCATTAACTGAAGAAAACAATAGAGTGAACCAGGGATTAACAAGTGGCATGCCACCAAACTTGCAAAATCAAATGCCGGATCTTATGTCTACCATGCCTCTAAACACTTGTTCCAATACAGCATCCGAATTGAGGGACTATGACCCTAAGAACCCTCTAAAATCACTTCCCCAAGAACTTGTCCCAATACCATTCAAGGGTGGAGGCATGTTCTCCACCAATGCAGGTCCACTTTTTGGTGCCCCAAAAAGCATGTCTCCCTCTTCTTCCACCCTTCAGCTTAGTTCCAATACCTCATCATCAACCTTCAATTACTTGCAAGACAACAAAAACGGAGCACTAGTTTCTGCCTCAGCTCAGATGTCAGCAACAGCTTTATTACAAAAAGCAGCACAAATGGGCTATGTTAGTAGCATGGCCGGTCCTGATCAAGTTTCTTCCGCTAGACCACAATTTTCTGCTCCTATTCTTCAGCATAACCCTTCATTTGATCACTTCCCTTCTCAGCCTGATTTGTCTAACATTGCTGGGGTGAGTGGTGGAGGAGCATTCACCAACCAATTGTTTCATAAAGGACAAGAAGAAATTTCACAACTTTTTGATACTAACACTACTGGGTCTACAATCAATGATGTAGGAATGTTTAACCAAATGTCAATGGGAAGTGGGCACAACCAAGGGTTGATGAATAATGTGGAACAAGAGAGTTGTAATGGTTCGAGCTTGATCCGTGGAAGAGATGGAACTAAAGGTAACCCAATGCAGGCATCAAGGTTTGGAGGGAATGACATGACAACGGTTCATGATTTCTTGGGCATTGGAGGGTCAACTTCAAGAGCTAGGTCAGAAATTATGAACCACTTTCATCACCATCTTCCACATGAGGATTCAGCTATGGAGGAACCCATTTGGGATGTTTGA 1584 0.4287 MSNISGDEGSFSSGHNGEEVHQESQQPQLQKHLHDSSSGPSSASNSNGSINEQQTKKKRNLPGTPGKYSNTLHFNFYPNAEVVALSPTTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQNQMPDLMSTMPLNTCSNTASELRDYDPKNPLKSLPQELVPIPFKGGGMFSTNAGPLFGAPKSMSPSSSTLQLSSNTSSSTFNYLQDNKNGALVSASAQMSATALLQKAAQMGYVSSMAGPDQVSSARPQFSAPILQHNPSFDHFPSQPDLSNIAGVSGGGAFTNQLFHKGQEEISQLFDTNTTGSTINDVGMFNQMSMGSGHNQGLMNNVEQESCNGSSLIRGRDGTKGNPMQASRFGGNDMTTVHDFLGIGGSTSRARSEIMNHFHHHLPHEDSAMEEPIWDV* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0468 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Apr4g0468 527 MobiDBLite consensus disorder prediction 304 322 - -
Apr4g0468 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 508 - -
Apr4g0468 527 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 508 - -
Apr4g0468 527 SUPERFAMILY beta-beta-alpha zinc fingers 95 193 IPR036236 -
Apr4g0468 527 SMART c2h2final6 137 167 IPR013087 -
Apr4g0468 527 SMART c2h2final6 172 192 IPR013087 -
Apr4g0468 527 SMART c2h2final6 96 118 IPR013087 -
Apr4g0468 527 MobiDBLite consensus disorder prediction 303 322 - -
Apr4g0468 527 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Apr4g0468 527 Pfam Zinc finger, C2H2 type 96 118 IPR013087 -
Apr4g0468 527 MobiDBLite consensus disorder prediction 1 66 - -
Apr4g0468 527 Gene3D Classic Zinc Finger 96 138 - -
Apr4g0468 527 Gene3D Classic Zinc Finger 150 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0468 Apr-Chr4 3939486 3941897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0468 56 359 IDZ Gene Family AT3G50700 54.711 1.18e-105 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g0468 zf-C2H2 0.0092 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0468 - - gmx:100779705 813.142