LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr4g0467	ATGGATGTCTGGAACGAAGATTTTTTGGAGCTGGACGTTGGGAGTTCCGTGGAGTCGTTCCAGAGGTTTTTGGTTTCGCAAAGAGAACTCTTCCACAGCCAGATCCACCAGTTTCAGGAAATCGTCGTCACACAATGCAAACTCACCGGCGTCAATCCTCTCTCTCAGGAAATGGCAGCTGGTGCTCTGTCAATAAAAATTGGGAAAAGACCTAGGGATTTATTAAATCCAAAGGCTGTAAATTACATGCAATCGGTTTTTTCCATTAAAGATGTCATTAGCAAGAAAGAATCTCGTGAGATCAGTGCTTTATTTGGTGTCACTGTCACACAGGTGCGAGATTTTTTTACTAGTCAACGTTCAAGAGTGAGGAGACTAGTGCAGTTGTCAAGGGAGAGGGCTTTAATATCTAAATCTTGTGAAGAATCTCATGATGATCAAATAAACACTGATCCAGTGAGACCAATAAATCTGGCTCCCTTAGATTCTGCTGGCCCCACCAATGCTGAAGAAGCATCTTGTTCAGCACAGGAAGCAGATTTGTCTGACTTAGATGACTCAGATAAACAATTCGTTGATAACATTTTTAGTTTAATGCAGAAAGAGGAGACGTTTTCTGGGCAGGAGAAATTGATGGAGTGGATATTGACAGTACAGAATTTTTCAGTATTGTTGTGGTTTTTGACCAGAGGGGGTGCAATGACTTTAGCAACTTGGTTGAGTAAAGCTTTTGTTGAAGAGCAAACGAGTGTCCTTCTTCTTATCTTGAAGGTTCTTTGTCATTTACCTTTACATAAAGCTCTTCCTTCACATATATCAGCTATATTGCAGAGTGTTAATAGACTAAGATTCTACAGGACATCAGACATATCAAACAGGGCAAGGGTTTTGTTGTCAAAGTGGAGCAAATTATTAGCAAGGAACCAAGCAATTAAAAAGCCCAATGGTGTTAAACCTTCTAGTGATGGTCAAAAAGCGATAATGCTTTCTCAGAGTATTGGTCAATTTATGGTTTCTGAATCATGGCATTCAAATATTGATGTTCCTGAAGATATTCTTGCTCTCTCAAATGAATGTTCAGATAATGTCAGGAAAGGGGAATCTTCACAATCTGTGAAATTGTTGCCTCCCAGCTCAGACGATTCTAAAAAGCCCACCCTTGGTGTATCTTCATCTCAATCTAGAGAGCGCAGGAAAGTGCAACTGGTGGAACAGCCAGGCCAAAAATCGGTGAGCAGAAGCTCACAAGGGACAAGAGCAGGGCCTGTAAGTCAAGGCCGACCCATGTCTGCTGATGATATCCAGAAAGCAAAAATGCGTGCATTATTTATGCGGAGTAAGTATGGGAAAGCTGGCTCTTCGAAAGAAAGTAAAGAAACAAAGATTGATAGTCTGAATAAACCTCAGACAAACCAGGCCAGCATTGCAGCTTGCTCTGCTAAAGTTCCTACTTCACTCAAAATTGAAGACAAGAAACCTCTGTTACTTGCCTCTAAAACCACTAATAGGCCAGAAGCTTCTTATTCAAAACCGAAAATGGATTTGAAGGAACCTCTTTGGGAGAAGTGCAAGAGGGTGCAAATCCCATGGAAAACACCAGCAGAAGTTAAACTTCAAGATACGTGGAGAGTTGGTGCCGGTGAAAATAGCAAAGAGGTTGATGTCCAGAAAAACAGAAACCGCAGGGAAAAAGAAACTATATATAAGATTGTCCAAGAGGTACCTTCTAACCCCAAGGAGCCGTGGGACCTCGAAATGGACTATGATGACACTTTGACACTGGAAATTCCCATTGAGCAGCTACCAGACGGTGATGGTGCAGAAATAGCAGTTGCCCCCAACCAGGTTGCAACTCATATTGTTCAGGGGGTGGCCTCCACATCTACAGCTACTGCTGAACCTGATTTAGAATTGCTTGCCGTACTGCTAAAAAATCCGGAGTTGGTGTTTGCCTTAACTTCTGGACAATCTGGTAGCATACCAAGTGATGAAACCGTGAAGCTGCTTGACATGATCAAGAGAGGAGGATTGAACTTGGGTTTAAGTGAAAATACAAATGGCAATTATGGAATGAGTGTAAAGGCTCCGGAGAAGGTGGAAGTTTCTCTCCCATCGCCAACTCCTTTAAGCGATCCAAGAACGAGTGGATGGAGCACAGCAGCATCAAAAAATCCTTTTTCACGGCGACCTGATAGATTTATCCAGAGCCCTGCTGCAGTGGCAACAACCAACTCATTATCTCAGATTCCGATAACTGGCACTACAGTAAGGCAACAGCCAACAGTTGCGGCTCCATCATTGAGGCAGCTCACCACCTCATCGGTTTCTCCATATTCACTGCCTCAGGCAACTAATATTGTTCCTGAAAAGCAACCATCACTCGCTCATTCATCTGTGCATATGCAAACACCGTCCTCAGATATAGGTTTAACCATGAAGAAGAACTTAATCACTGCAAATGCATCTTCAGTTAACTTACCTGGCACACATTCATCTCTAGCAATGCGAGCTGATGGCACGAATTACTTAAAACCTGTTCCTAATTTGAGTGTACAACAAGAGGGTTTGTCTAATTCATTCTCGCAACCCTTTATGTTACCCTCACCAACGCCACCATCACATTCAGCCACACCGCAACGAAGACATCCACAATTGGTTCCGGAAGCTCATTACACTGAACCTTCCTATCGTAACTCTGTCAATTCCTACCCACCACAAACCGAAAAATCAGGTCACGTGTCAGATATGTGGAGAATTAGACAGGATATTTCATCCAGTTATCATTCTCAACGAAATCATAACAACTATAACACAATGGTTGGGGGATCCATGCAATCCGGTTCTTGGGATAGAAATAATCATGGAAGGGAAGAATTTGAATCATGGAGTCCGGAGAATAGTCCAACTAGAAATCCTAGGTATGTTCCTGGTAGAAATTTCCCAGAGTCCAGAATGAATCACGCCAGAAATCATAGACCTGAATGGTCAAGGCAGCGGGGTTCTTCTGGACACTGGGACCCTGGTAGACAGGGGAACAGAAGGTGGCATGATCAGAGACGATAG	3063	0.4296	MDVWNEDFLELDVGSSVESFQRFLVSQRELFHSQIHQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSVFSIKDVISKKESREISALFGVTVTQVRDFFTSQRSRVRRLVQLSRERALISKSCEESHDDQINTDPVRPINLAPLDSAGPTNAEEASCSAQEADLSDLDDSDKQFVDNIFSLMQKEETFSGQEKLMEWILTVQNFSVLLWFLTRGGAMTLATWLSKAFVEEQTSVLLLILKVLCHLPLHKALPSHISAILQSVNRLRFYRTSDISNRARVLLSKWSKLLARNQAIKKPNGVKPSSDGQKAIMLSQSIGQFMVSESWHSNIDVPEDILALSNECSDNVRKGESSQSVKLLPPSSDDSKKPTLGVSSSQSRERRKVQLVEQPGQKSVSRSSQGTRAGPVSQGRPMSADDIQKAKMRALFMRSKYGKAGSSKESKETKIDSLNKPQTNQASIAACSAKVPTSLKIEDKKPLLLASKTTNRPEASYSKPKMDLKEPLWEKCKRVQIPWKTPAEVKLQDTWRVGAGENSKEVDVQKNRNRREKETIYKIVQEVPSNPKEPWDLEMDYDDTLTLEIPIEQLPDGDGAEIAVAPNQVATHIVQGVASTSTATAEPDLELLAVLLKNPELVFALTSGQSGSIPSDETVKLLDMIKRGGLNLGLSENTNGNYGMSVKAPEKVEVSLPSPTPLSDPRTSGWSTAASKNPFSRRPDRFIQSPAAVATTNSLSQIPITGTTVRQQPTVAAPSLRQLTTSSVSPYSLPQATNIVPEKQPSLAHSSVHMQTPSSDIGLTMKKNLITANASSVNLPGTHSSLAMRADGTNYLKPVPNLSVQQEGLSNSFSQPFMLPSPTPPSHSATPQRRHPQLVPEAHYTEPSYRNSVNSYPPQTEKSGHVSDMWRIRQDISSSYHSQRNHNNYNTMVGGSMQSGSWDRNNHGREEFESWSPENSPTRNPRYVPGRNFPESRMNHARNHRPEWSRQRGSSGHWDPGRQGNRRWHDQRR*	1021

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	405	423	-	-
	Apr4g0467	1020	SUPERFAMILY	Homeodomain-like	69	129	IPR009057	-
	Apr4g0467	1020	Gene3D	-	68	125	-	-
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	894	909	-	-
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	363	431	-	-
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	984	999	-	-
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	701	730	-	-
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	928	950	-	-
	Apr4g0467	1020	PANTHER	HOMEOBOX PROTEIN LUMINIDEPENDENS	1	1020	-	-
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	707	725	-	-
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	363	396	-	-
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	859	915	-	-
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	446	468	-	-
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	140	182	-	-
	Apr4g0467	1020	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED	1	1020	-	-
	Apr4g0467	1020	CDD	homeodomain	69	125	IPR001356	GO:0003677
	Apr4g0467	1020	SMART	HOX_1	68	130	IPR001356	GO:0003677
	Apr4g0467	1020	ProSiteProfiles	'Homeobox' domain profile.	66	126	IPR001356	GO:0003677
	Apr4g0467	1020	MobiDBLite	consensus disorder prediction	928	1020	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr4g0467	Apr-Chr4	3927818	3936748	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr4g0467	519	729	Homeobox Transcription Factor Family	AT4G02560	50.704	1.83e-46	179

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr4g0467	-		-	gmx:100806633	1640.94