Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0452 ATGGAGGAAAACTCTGCATCTGAAAGGAGAGAGGAGTTTGGGAAGTTGCAGTATGGATGCGAGCACTACAAGAGACGATGTAAAATTCGAGCTCCATGTTGCAATCAGATCTTTCCATGTCGTCACTGCCACAACGACGCCATGAGCTCATCTAGCAACCCCGTGGATCATCATGAACTTGTTAGACGCGATGTTAAGCAAGTTATATGTTCAATCTGTAATACTGAACAGGAGGTTGCCAAGGTCTGTTCTAATTGTGGTGTCAACATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACGGATAAAGGACAATTCCATTGTGATGAATGTGGGATTTGCAGGGTTGGTGGTCGTAATAACTTCTTTCACTGTAAGAAATGTGGTTCTTGCTATTCACAGAGCTTGCAAAACAACCACTCATGTGTAGAGAACTCAATGAAGAGCTCCTGCCCTGTCTGTTTTGAGTACCTTTTTGATTCAATAAAAGGCAGCATCATTTTTAAGTGTGGACACACAATGCATTTGGAATGCTATCAGGAGATGACAACACAAAAACAGTACCGTTGCCCTATCTGCTTGAGGACAATGGCTGATATGTCTCAGGACTGGAAACATTTAGATCAGGAGATTGAAGCTTTTCCTATGCCTGAGGACTATAAGTTTGAGGTTTCAATTTTATGCAATGATTGTAACTCTACCAGCAGAGTTTCTTTTCACATATTTGGTCATAAGTGCAGACACTGCAGTTCGTATAACACCCGTAGGATTTCCTCACCCGAACATCAGTGA 804 0.4154 MEENSASERREEFGKLQYGCEHYKRRCKIRAPCCNQIFPCRHCHNDAMSSSSNPVDHHELVRRDVKQVICSICNTEQEVAKVCSNCGVNMGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRNNFFHCKKCGSCYSQSLQNNHSCVENSMKSSCPVCFEYLFDSIKGSIIFKCGHTMHLECYQEMTTQKQYRCPICLRTMADMSQDWKHLDQEIEAFPMPEDYKFEVSILCNDCNSTSRVSFHIFGHKCRHCSSYNTRRISSPEHQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0452 267 ProSiteProfiles Zinc finger CHY-type profile. 13 88 IPR008913 GO:0008270
Apr4g0452 267 Pfam Ring finger domain 154 197 IPR001841 -
Apr4g0452 267 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 11 261 IPR031109 GO:0008270|GO:0016567
Apr4g0452 267 Pfam CHY zinc finger 20 100 IPR008913 GO:0008270
Apr4g0452 267 SUPERFAMILY RING/U-box 154 201 - -
Apr4g0452 267 ProSiteProfiles Zinc finger CTCHY-type profile. 90 154 IPR017921 -
Apr4g0452 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 11 261 - -
Apr4g0452 267 SUPERFAMILY Zinc hairpin stack 91 148 IPR037275 -
Apr4g0452 267 Pfam Zinc-ribbon 203 259 IPR039512 -
Apr4g0452 267 SMART ring_2 155 197 IPR001841 -
Apr4g0452 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 216 IPR013083 -
Apr4g0452 267 Gene3D - 226 266 - -
Apr4g0452 267 SUPERFAMILY CHY zinc finger-like 16 89 IPR037274 GO:0008270
Apr4g0452 267 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0452 Apr-Chr4 3826290 3829807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0452 18 263 C2H2 Transcription Factor Family AT3G18290 42.063 1.46e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0452 K10144 - gmx:100818374 487.648