Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0451 ATGAGTGGTTCTCCATCTTCTACACAACAAGCGCGACCCTGTGATTACTGTGGCCACTCCACAGCACTTCTCTATTGCAGAGCCGATTCAGCAAAACTATGTTTCTCTTGCGATCGCGAAGTTCACTCCACCAACCAGCTTTTCTCGAAACACACGCGCACCCTGCTCTGTGACGCATGTGATCATTCCCCTGCAACCATACTCTGTTCCACTGAAACCTCTGTTCTGTGTCAGAACTGTGACTGGGAAAGGCACAATGTTTCCCTCTCTTCCCTTCACGAACGAAGGCCCCTTGAGGGTTTTACTGGGTGCCCTTCAGTTACTGAACTCTTAACCATCGTGGGGTTCAGAGATATCGGAAAAAAGGCTCTGCTTTCGCCTGAAGAAAGTGATGGGTTTTTGGGGTGCGAAATTGAAGGTTTATCTTCGGATTTGTTTGTTTGGGATGCTCCTTCTGTTGTTAGTCTTGACGATTTGATTTCTTCTTCTGCTTCTTCTCACAACTTTCAGGCTATGGAGGTTCCTCCTATGCCCAAGAATCGTAAGGCTGCTTGTGGGCGACATAGAGAAGAGATTCTTGGTCAGCTTCGTGAACTAGCAAAGTCTGAGCCCTTGGACCCTGAAGAACAGTATGTTCAATCGGGGAATTTGTCCACTGGTTTCGAACGTGACATGGAGGCTGATATCTTTCCTTCTCATGAGTGGCATAGAGAAAGCAGTGAGCAAACGTATCAAGTTGTTCCTCCTGACACATCATTGAGAGCTTATACTGAAAAAATTCCAGTTAACCATTCTACTTCTGCTGTTGGGGAAACTCTCACCTATGGCAACAGTGGAGGGACACCATCCGTTTCTCTTAAGTCTGAAACCTTATCAACTACTCCTAAAGCAGCACCATGCGAGTTAGCAAGTCAAGAAAGAGATTCTGCATTGTTACGGTACAAGCAGAAGAAGAAAACAAGAAGGTATGACAAGCACATAAGGTATGAATCACGAAAAGTCCGGGCAGAAGGCAGGGCAAGAGTCAAGGGGCGATTTGCCAAGATGGAACACTGA 1056 0.464 MSGSPSSTQQARPCDYCGHSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDHSPATILCSTETSVLCQNCDWERHNVSLSSLHERRPLEGFTGCPSVTELLTIVGFRDIGKKALLSPEESDGFLGCEIEGLSSDLFVWDAPSVVSLDDLISSSASSHNFQAMEVPPMPKNRKAACGRHREEILGQLRELAKSEPLDPEEQYVQSGNLSTGFERDMEADIFPSHEWHRESSEQTYQVVPPDTSLRAYTEKIPVNHSTSAVGETLTYGNSGGTPSVSLKSETLSTTPKAAPCELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAEGRARVKGRFAKMEH* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0451 351 ProSiteProfiles Zinc finger B-box type profile. 52 98 IPR000315 GO:0008270
Apr4g0451 351 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Apr4g0451 351 CDD Bbox1_BBX-like 13 56 - -
Apr4g0451 351 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 9 351 - -
Apr4g0451 351 ProSiteProfiles CCT domain profile. 307 349 IPR010402 GO:0005515
Apr4g0451 351 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 9 351 - -
Apr4g0451 351 Pfam B-box zinc finger 10 54 IPR000315 GO:0008270
Apr4g0451 351 Pfam B-box zinc finger 56 98 IPR000315 GO:0008270
Apr4g0451 351 SMART bboxneu5 9 56 IPR000315 GO:0008270
Apr4g0451 351 SMART bboxneu5 57 98 IPR000315 GO:0008270
Apr4g0451 351 CDD Bbox1_BBX-like 56 98 - -
Apr4g0451 351 Pfam CCT motif 307 349 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0451 Apr-Chr4 3817594 3822627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0451 9 322 C2C2-CO-like Transcription Factor Family AT2G47890 42.901 2.49e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr4g0451 CCT 7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0451 - - gmx:100817838 575.859