Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0443 ATGAGGAGAAAGAGAGATATGGATGCTGCTGCCATAGACGCTCTTTGCCATGAACAAGGTGCGAATGATGATTTGTATGGTGCACTGTGGCGTGCATGCGCGGGAGCATCGGTTTATGTTCCCAGCATTGGAGAGAAGGTTTTGTACTTTCCACAGGGTCACTTGGAGCAGGTTGCTGCATTTGCCCAGCATCAGCAAGATGGTCACATGGAAATTCCCGTGTTTGATTTGCCTTCTAAGATCTTATGCAAGGTTATTGGTGTTCAGTTAAAGGCTGAACCTTACACAGATGAGGTTTTTGCCCAAGTTACATTACTTCCTCAGCTCAAGCAAGATGATTTTAATTTGGACGAAGAAGACAATATTCAGACTTCTCGCAGAAATTCTATCTACTCCTTTTGCAAGATACTGACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGCGACATGCTGATGACTGCTTCCGTCCTCTGGATATGACTCATCCAACACCAACACAGGACCTGGTTGCGAAGGACTTGCATGGGTTTGAGTGGCATTTTCGGCACATATATCGTGGTCAGCCGAAACGACACTTGCTTACTAGCGGTTGGAGCACATTCGTGAATTCCAAAAAACTTGTTGCTGGAGATTCATGCATTTTCGTTAGTGGGGAAAATGGAGAAATTCGTATTGGGATTCGTCGGGCAATGAAACATCACTCCAATGTATCTACATCTTCGTCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGACTAGTGCTTCCCATGCTGTTAACTCAGGATCCATGTTCACTGTCTATTTCCGCCCTTGGACGAACCCCTATGAATTTATTATTCCTCTGCAAAACTACATGAAGTCAATTGCACTCAACTATTCAATTGGAATGAGAGTACAAATGCTGTATGAAGTTGAAGAGTCTGCAAGAAGCAGATATGCAGGTACGATTATTGCTATTGAAGATATTGATAAAATTAGGTGGCCAGGTTCAGAATGGAGATGTTTCAAGGTGCAATGGGATGCTGTATTAGATGCATGTCTGCGTCCAGAAAGGGTTTGTCCATGGTGGATTGACCCCTTGGAATCTGTCAACGAGAAGCGCATTCCTATTTTCCCCATTCCAAACAAGACACATGTACTTAACCCGCGCCCTTTGCCTGGATTGAGCGGTGTTGCTGTGGAAGACATTATTCAGAATTCGGCCCAGCTTGCATCTCAGAGAGTGGATAGGGACTTACAAGGTCAAGATTACATTGGTGCATGTTCTTCACAGCCCATCCGTTGCTCACAGTTTGGGAAAAATCAGCTTCCCATTCCTATGCAAGACCCGCTTCACCACTCTCTTGGCAGCTCAATGTCATCTCCATATGAAGACTTGTCAACTTCAAGTACAATTTTGAACTCCACTGGTTTTGACTCGCAGGGATGCCATTCTTCTGAATCTAAAGATGAAAATGATGTTCCTTTTGGCCAACCAGGCAGTTATAGTAGATACAAGCTTTTTGGGGTTAGCTTAATTGATAACCAACCGGAGCTCCCTTCACCACAATTTGCTGCTTTGAGCAAGACTTCAAGTCCCCTTTCCAGTCATCCAACGTGTGTTACCTCTGGGAAAACGTGCAAGAAGTGTCGCTTTGTTAGTAGAAGCTGCACAAAGGTGCTTAAGCTGGGGACTGCTCTTGGAAGAGCGGTTGACCTCTCACGTTTTCCTGGATATGATGAACTAATTTCCGAACTTGACTCGATGTTTGATTTTGGGGGAAGTTTAATCAATGGAAGCAGTGGATGGCAAGTGACCTGCATAGATGATGATGGAGACATGATGCTGTTAGGGGATTACCCATGGCAGGATTTCCAGTCCATGGTGCAAAAGATGATAATATGTCCAAAGGACGGTATTAACAATCTTAATCCAAGCTCTTCAACAGATCCTAGAAACCTTTAA 1965 0.4412 MRRKRDMDAAAIDALCHEQGANDDLYGALWRACAGASVYVPSIGEKVLYFPQGHLEQVAAFAQHQQDGHMEIPVFDLPSKILCKVIGVQLKAEPYTDEVFAQVTLLPQLKQDDFNLDEEDNIQTSRRNSIYSFCKILTPSDTSTHGGFSIPKRHADDCFRPLDMTHPTPTQDLVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNSKKLVAGDSCIFVSGENGEIRIGIRRAMKHHSNVSTSSSLISGHSMQLGILTSASHAVNSGSMFTVYFRPWTNPYEFIIPLQNYMKSIALNYSIGMRVQMLYEVEESARSRYAGTIIAIEDIDKIRWPGSEWRCFKVQWDAVLDACLRPERVCPWWIDPLESVNEKRIPIFPIPNKTHVLNPRPLPGLSGVAVEDIIQNSAQLASQRVDRDLQGQDYIGACSSQPIRCSQFGKNQLPIPMQDPLHHSLGSSMSSPYEDLSTSSTILNSTGFDSQGCHSSESKDENDVPFGQPGSYSRYKLFGVSLIDNQPELPSPQFAALSKTSSPLSSHPTCVTSGKTCKKCRFVSRSCTKVLKLGTALGRAVDLSRFPGYDELISELDSMFDFGGSLINGSSGWQVTCIDDDGDMMLLGDYPWQDFQSMVQKMIICPKDGINNLNPSSSTDPRNL* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0443 654 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Apr4g0443 654 SUPERFAMILY CAD & PB1 domains 560 631 - -
Apr4g0443 654 SUPERFAMILY DNA-binding pseudobarrel domain 125 263 IPR015300 -
Apr4g0443 654 Pfam Auxin response factor 261 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr4g0443 654 Gene3D - 298 373 - -
Apr4g0443 654 CDD B3_DNA 132 233 IPR003340 GO:0003677
Apr4g0443 654 Gene3D - 551 644 - -
Apr4g0443 654 Gene3D - 130 235 IPR015300 -
Apr4g0443 654 Pfam AUX/IAA family 596 634 IPR033389 -
Apr4g0443 654 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Apr4g0443 654 ProSiteProfiles PB1 domain profile. 555 638 IPR000270 GO:0005515
Apr4g0443 654 PANTHER AUXIN RESPONSE FACTOR 14 648 - -
Apr4g0443 654 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 648 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr4g0443 654 SMART B3_2 133 235 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0443 Apr-Chr4 3744449 3751879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0443 13 645 B3 DNA Binding Superfamily AT1G59750 40.390 8.72e-155 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr4g0443 B3 5.2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0443 - - lja:Lj1g3v4764520.2 905.205