Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0425 ATGGCTTCGAGATTCTGGACCCAGGGTGGAAGTGATTCGGAGGAGGAGGAGAGTGATTACGATGAGGAGGATGAAACCGCGGTGGGTGAATCTGCTAGTCAAGCCGTGACCAGCAGGTACCTGCAGGACAATGCGAGTGACAGTGATGATTCCGATGGCCAAAAGCGCGTTGTGAGGTCAGCAAAAGACAAGCGTTTTGAGGAGATGGCTTCCACTGTTGACCAAATGAAGAATGGCATGAAGATCAATGATTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAGCAGCTTGAGAAGGTCATGCGTGTGACGGAATCGGAGAAAGTTCCTAATCTCTACATCAAGGCACTTGTCATGTTGGAAGATTTCTTGGCTCAGGCATTGGCCAATAAGGATGCCAAGAAGAAGATGAGTAGCAGCAATGCTAAAGCCTTGAACTCGATGAAGCAGAAGTTGAAGAAGAATAATAAGCAGTATGAGGATTTGATTAATAAGTGTAGGGAGAATCCGGAGAGTGAGGATGAAAAAGATGATGAGGAGAGCGAGGAAGAGTATGAGAGTGATGATGAGATTATTGAGCCGGAGCAGCTTAGAAAGCCGGAGCTGAAATCGGATTCGGAAGCTTCACAATTTGAAGATGAAAAGGCAGATGCTGGTGAAGGTCATTGGGACCAAAAGCTTAGCAGGAAAGACAGGCTTATGGATAGGCAGTTCATGAAAGACCCTAGTGAGATCACCTGGGACACTGTTAACAAAAAATTCAAGGAGGTGGTGGCCGCTAGGGGCAGGAAGGGAACTGGGAGGTTTGAACAAGTTGAGCAACTTACTTTCTTAACAAAGGTTGCTAAGACACCTGCGCAGAAGCTTGAAATTCTGTTCAGTGTCGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAATGGGCATATGCCCATTAATGTATGGAAAAAATGTGTACAGAACATGTTGATCATTCTTGATATTCTAGTGCAGTACTCAAACATAGTGGTTGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAGAAAGGCCCTGATTACAGTGGACCAATTAGGGTTTGGGGTAACTTGGTTGCTTTCTTAGAAAGAATTGATGCTGAGTTTTTCAAGAGCCTGCAGTGTATAGATCCTCATACACGTGATTATGTTGAGAGACTCAGGGATGAGCCCATATTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTCAGAGATTTCAAAGCTGCTTCTAAGGTAGCCTTAAGGAGGGTTGAGCTCATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGACTGAAGATGGAGATAATGGAGGGGAAGCAAGTGAGGAGTCGAAAGGATTTGAGGAATCCAGAATTCCGACTGCATTTGTTGCTACTCCAGAACTTGTGGCCCGGAAACCCACCTTCCCTGAGAATAGCAGGACCCTAATGGATATATTGGTATCGTTGATATACAAATATGGAGATGAGCGAACTAAAGCACGAGCAATGCTCTGTGATATTTATCACCATGCTCTTCTTGATGAGTTTTCGATAGCCCGCGATCTGCTGCTTATGAGCCATTTGCAAGATAGTGTTCAGCATATGGACATTTCAACCCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGCGCTTTTCGGGTTGGACTGATTTCTGATGCACATGGCTGTCTGTCTGAACTTTATTCTGGTGGAAGGGTGAAGGAGTTGCTTGCGCAAGGCGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGGCGTCAGATGCCATATCATATGCACATAAATCTTGAGCTTCTGGAGTCTGTGCATCTTGTATCTGCTATGCTACTGGAAGTTCCCAATATGGCAGCAAACATTCATGATGCTAAACGCAAGGTCATTAGTAAGACTTTCCGTCGCTTGCTTGAGGTCAGTGATAAACAAACATTCACTGGTCCACCAGAAAATGTCAGGGATCATGTTATGGCTGCCACGAGGGTTCTTAGCAAAGGAGACTTCCAGAAGGCTTTTGACATTATTGTCTCTCTTGATGTATGGAAATTTGTGAGAAATCGGGATACTGTGCTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTGAGAACATATCTCTTTACCTTCTCTTCATCTTATGAATCTTTGAGTCTTGATCAGCTCACAAAAATTTTTGACCTCTCTGTTTCTCGCACTCATAGCATTGTTAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAGATGTTGAACACTCCAGGCTGCAGGCATTAGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCTGAGAGTAATGAAAGAGCAACAGAGGCAAGGATAGGCGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGCCCAGGACTATGCTGCTGCTGCCAGTAGTGGAACAGGCCCTTTAGGTGGTAGGTGGCAAGACTTGTCCCTTTCTCAGCCAAGGCAAGGCAGTGGGCGCACAGGGTATGGCAGCGGTGGTGGAAGGCCAATGGCATTGGGTCAAGCGGGTGGGAGTGGCTATTCAAGGGACCGAATGGGACGGGGAACAGGTACTGGCTATCAGAGTGGACGATATACTCAAGGTTCAGCATTGAGGGGACCTCAGGGCGATGTATCTACTCGCATGGTGAGCCTTAAGGGAGTTCGTGCTTAA 2796 0.456 MASRFWTQGGSDSEEEESDYDEEDETAVGESASQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNGMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEDEKDDEESEEEYESDDEIIEPEQLRKPELKSDSEASQFEDEKADAGEGHWDQKLSRKDRLMDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLIILDILVQYSNIVVDDSVEPDENETQKGPDYSGPIRVWGNLVAFLERIDAEFFKSLQCIDPHTRDYVERLRDEPIFLVLAQNVQEYLERVRDFKAASKVALRRVELIYYKPQEVYDAMRKLAELTEDGDNGGEASEESKGFEESRIPTAFVATPELVARKPTFPENSRTLMDILVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISDAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLVSAMLLEVPNMAANIHDAKRKVISKTFRRLLEVSDKQTFTGPPENVRDHVMAATRVLSKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKIFDLSVSRTHSIVSRMMINEELHASWDQPTGCIVFQDVEHSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDAQDYAAAASSGTGPLGGRWQDLSLSQPRQGSGRTGYGSGGGRPMALGQAGGSGYSRDRMGRGTGTGYQSGRYTQGSALRGPQGDVSTRMVSLKGVRA* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0425 931 MobiDBLite consensus disorder prediction 12 28 - -
Apr4g0425 931 Pfam PCI domain 660 788 IPR000717 -
Apr4g0425 931 MobiDBLite consensus disorder prediction 175 193 - -
Apr4g0425 931 MobiDBLite consensus disorder prediction 45 64 - -
Apr4g0425 931 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 930 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Apr4g0425 931 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 869 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Apr4g0425 931 Gene3D - 727 796 IPR036388 -
Apr4g0425 931 MobiDBLite consensus disorder prediction 839 931 - -
Apr4g0425 931 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Apr4g0425 931 Coils Coil 926 931 - -
Apr4g0425 931 SMART PINT_4 721 809 IPR000717 -
Apr4g0425 931 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Apr4g0425 931 MobiDBLite consensus disorder prediction 155 174 - -
Apr4g0425 931 MobiDBLite consensus disorder prediction 135 154 - -
Apr4g0425 931 MobiDBLite consensus disorder prediction 194 229 - -
Apr4g0425 931 MobiDBLite consensus disorder prediction 134 229 - -
Apr4g0425 931 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Apr4g0425 931 MobiDBLite consensus disorder prediction 900 915 - -
Apr4g0425 931 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 930 - -
Apr4g0425 931 MobiDBLite consensus disorder prediction 1 64 - -
Apr4g0425 931 Coils Coil 144 171 - -
Apr4g0425 931 MobiDBLite consensus disorder prediction 30 44 - -
Apr4g0425 931 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0425 Apr-Chr4 3615693 3620228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0425 1 931 Eukaryotic Initiation Factors Gene Family AT3G56150 69.412 0.0 1200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0425 K03252 - gmx:100779751 1592.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0425 4 3615693 3620228 Apr4g0425 4 3615693 3620228 ECH