Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0411 ATGCGGAGCTTCAGAATGAGGAACTTGTTGTCCCGTGTCAAAAGACGGACAAACAAAAACATCACAAACAGAAACGGAGTCACACGCAAACTCAGAAACCTAAACTGCATTTCCGTTTCAAAAGAGTCGCCATGTCAAATGGAGGAAGAAGAAGAAGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACACACCCACGGTGTTCAACCCTTGGGCAACCTTTATCTGAACCCAGGTTCCATCAACTCCAGAGACACTGGGTTAGGTAACCTCCATACCCTTTCGGATGAGCTTGTCCTTGACGTTCTTGGATTTTTGGATGCTACCAACTTGGGGGTCTTGGCCACTGTGAGCAAATCTTTTTATGTTTTCACCAACCATGAACCACTTTGGAGGAATCTTGTGTTGGAGAATCTTCTTGCTGGGTTTCGCTACAACGGGTCTTGGAAATCCACTTATGTTGCTGCTTGTTGCCCTTCATTTGATATCTCAACCAGTGCTCTTCGGAGTTTCAAAGTTAGAGACTTTTATTCGGATTATCTTTTCCAGAGTTGGCTCTGTGCGAATCTTGAAATGAAGCCCGAGTGGTTAGAGAGGGATAATATAGTTAGAAAGAGAGGAATTTCGGTTGAAGAGTTTGTGTTGAGTTTTGAGGAGCCTAATAAGCCTGTGTTGTTGGAAGGGTGTGTTGATAATTGGGATGCATTGAGAAATTGGGATAGAGATTATTTAGTGCGGTTGTGTGGTGATGTTAAGTTTTCTGTTGGGCCTGTGGAGATGAAGCTTGGAGACTATTTTGGGTACTCGGATCAAGTTAGAGAAGAAAGACCATTGTATTTGTTTGATCCAAAGTTTGCTGAAAAAGTTCCGAAATTGGGTTCGGAATATGAAGTGCCAGTGTACTTTCAGGAGGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCCGATTACAGGTGGATTATTATTGGACCAGTTGGGTCTGGATCATCTTTCCATGTTGATCCGAATTCAACTTCGGCTTGGAATGCGGTGATCAAGGGCTCCAAGAAATGGATATTGTTCCCTCCTGATGTAATTCCGCCTGGCGTTCATCCTAGTGCTGATGGTGCAGAGGTGGCATCTCCCGTTTCAATAATTGAATGGTTCATGAACTTTTATGGTGCAACAAAAAGTTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGAGAGGTTATCTTTGTGCCTAACGGATGGTGGCATTTAGTGATCAACCTGGAAGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATGTGTTAAATGTATTGGATTTTCTTAAAAGGCCAAATGCTAGCACATTGGTATCTGGAACAAGGGATCGAGTGAATTTATATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGAAATTGATGAACTGACTCAAAAAGAAGAAGAGAGAAAGACCCAGCGGAGGAAACTTTCCTTCTGGGATTCTGTCACAGATGCTAACATGGGAGCTTTCAAGTTCTCTTTCTAG 1539 0.425 MRSFRMRNLLSRVKRRTNKNITNRNGVTRKLRNLNCISVSKESPCQMEEEEEEGFSIKSSAPSHTHGVQPLGNLYLNPGSINSRDTGLGNLHTLSDELVLDVLGFLDATNLGVLATVSKSFYVFTNHEPLWRNLVLENLLAGFRYNGSWKSTYVAACCPSFDISTSALRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKRGISVEEFVLSFEEPNKPVLLEGCVDNWDALRNWDRDYLVRLCGDVKFSVGPVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPKLGSEYEVPVYFQEDLFGVLGNERPDYRWIIIGPVGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSADGAEVASPVSIIEWFMNFYGATKSWKKKPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNVLNVLDFLKRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTQKEEERKTQRRKLSFWDSVTDANMGAFKFSF* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0411 512 Gene3D Cupin 177 432 - -
Apr4g0411 512 SUPERFAMILY F-box domain 86 157 IPR036047 GO:0005515
Apr4g0411 512 SUPERFAMILY Clavaminate synthase-like 204 445 - -
Apr4g0411 512 SMART fbox_2 94 134 IPR001810 GO:0005515
Apr4g0411 512 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 57 510 - -
Apr4g0411 512 SMART cupin_9 278 447 IPR003347 -
Apr4g0411 512 Pfam Cupin-like domain 213 430 IPR041667 -
Apr4g0411 512 Gene3D - 84 160 - -
Apr4g0411 512 ProSiteProfiles JmjC domain profile. 287 447 IPR003347 -
Apr4g0411 512 ProSiteProfiles F-box domain profile. 88 134 IPR001810 GO:0005515
Apr4g0411 512 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 57 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0411 Apr-Chr4 3503595 3506336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0411 79 435 Glycosyltransferase AT1G78280 38.525 9.76e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr4g0411 Cupin_8 8.1e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0411 - - lja:Lj1g3v4753250.1 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0411 4 3503595 3506336 Apr4g0411 4 3503595 3506336 ECH