Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0404 ATGGAAGGCAAAACTGGAAGTCACATGACATCAGCTGTGGCCTTTGTTGAAGGTGGGATTCAAGAATCCTACGATGATTCTTGCAGCATTTGCCTTGAGGAGTTTTGTGAAAGTGATCCTTCTACGGTCACTACCTGCAAGCACGAGTATCACCTGCAGTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATCCCACCAGTCAGGAATTGTTTGAGGGAGTAGAGCAGGAGAGGAACTTGAGGGTTACCTCATCAGGAAATGCTGCTATTTTTCATCACCCTGCTTTCGGTGATTTTGGATTGCAGCACTTACGCATGAGTGTAAATGATGCTGATTTTGAAGAGAGGATTATTCAACGTTTAGCTGCTGCTGCAGCAATGGGGAGAGCGCGCCACCTGGGTCGGAGGGAAGTGCAGAGAAGTCGTTCATCAGCTCATGGTCATCCACAGTACTTAGTTTTCTCAACTCAGCCTATTTCAGCTTCATCAGGTACTGATTCAGTTGCTGGAGGGGAAAATGAACCAGCTGCAGCTCCTAATGGAAGTTCATCTACCCTAATAAGATCTGATGGAGATGAACCATCACAGCAGATCCAGCATCTTCTAATTCAAAACTCTTCTTCTGCATCTAGATCTACTGTCATGGCAAGAAATCGCCAAGCAATTTACTCTAATGACAGAAGCTCTGCTGATCTTTCTTCACCAGCAAACCATGATAGAGGAGGGCCATCAGAATTCCAGTCATTTTCAGATTCTCTGCGGTCCAGACTTAATGCGGTGTCCATGAGATACAAAGAGTCAATCTCAAAGGGTGCAAGGGGATGGAAGGAGAGGCTGTTCTGTCGTAGTTCTTCTATGTCTGATCTTGATTCAGAAACTAGGAGAGATATGAATGCTGGAATTGCTAGTGTATCCCGCTTGATTGAATCCCTTGAAACTAATGAAAACAATAGAGCCGCGGGTACTTCTTTGTCAAATCATCTGGAGGATTGTTCCATAGGAGGGGTGTGCACCCGGAACAATGTTGATGCTAGTGGGGAAAACTCATCACATGACAACAATACTTCGGCTGCTTGTTCTGCTAGCTCAAATTCAAACTGA 1137 0.4521 MEGKTGSHMTSAVAFVEGGIQESYDDSCSICLEEFCESDPSTVTTCKHEYHLQCILEWCQRSSQCPMCWQPISLKDPTSQELFEGVEQERNLRVTSSGNAAIFHHPAFGDFGLQHLRMSVNDADFEERIIQRLAAAAAMGRARHLGRREVQRSRSSAHGHPQYLVFSTQPISASSGTDSVAGGENEPAAAPNGSSSTLIRSDGDEPSQQIQHLLIQNSSSASRSTVMARNRQAIYSNDRSSADLSSPANHDRGGPSEFQSFSDSLRSRLNAVSMRYKESISKGARGWKERLFCRSSSMSDLDSETRRDMNAGIASVSRLIESLETNENNRAAGTSLSNHLEDCSIGGVCTRNNVDASGENSSHDNNTSAACSASSNSN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0404 378 MobiDBLite consensus disorder prediction 174 207 - -
Apr4g0404 378 MobiDBLite consensus disorder prediction 145 164 - -
Apr4g0404 378 SUPERFAMILY RING/U-box 21 76 - -
Apr4g0404 378 MobiDBLite consensus disorder prediction 354 378 - -
Apr4g0404 378 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Apr4g0404 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Apr4g0404 378 MobiDBLite consensus disorder prediction 189 207 - -
Apr4g0404 378 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 6 377 - -
Apr4g0404 378 SMART ring_2 28 68 IPR001841 -
Apr4g0404 378 Pfam Ring finger domain 26 68 IPR001841 -
Apr4g0404 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 6 377 - -
Apr4g0404 378 MobiDBLite consensus disorder prediction 234 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0404 Apr-Chr4 3444209 3456652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0404 25 68 C3H Transcription Factor Family AT5G15790 50.000 4.27e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0404 K19043 - gmx:100800419 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0404 4 3444209 3456652 Apr4g0404 4 3444209 3456652 ECH
Apr4g0404 4 3444209 3456652 Apr8g0708 8 6803002 6808178 PCT