Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0401 ATGGGGGGAATAGAAATTTCGGAGGCTACTTCGTCTGTGAGTACAAATCCAAACACAAAAGCATTGGAGACTGTTCAAGAAAAACCTCCAGAAGTTGTGAAAATTGACAAGAAGGAAACGAAGCCAGTTCTATCCAATCAAGAGAACAATAATAACAAGACTTCAGATGAACAAATAAGGCGCATGGAACCTGCAATGAGACAAAGTGAAGCAGTTAGAGCAATAGAGCCTGCAAAGCCAAAAATGCCTTATTATGTTAAGAGGGTAGCAATAGCAGCTGCCGGGCTTCAAGCAGAGTCAATTTTGCTGAGAAAAAGTGGTCATTTGAAGGAGTACTATAATTTGGGACCAGAGCTTGGGAAAGGACAATATGGAACAACTTTTCTTTGCACAGAGAAAGCTACTGGAAAAAAATATGCTTGCAAGTCCATCCCAAAGGTGAAATTGGTGGGAAATGATGACGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGCTGGGTGTTCCAATGTGATTTCAATTAAAGGGGCTTATGAGGACGGTGTTGCTGTTCATGTTGTCATGGAAATGTGTGCAGGTGGGGAGCTGTTTGATAGGATTGTGGAAAGAGGGCATTACACAGAAAGAAAGGCAGCTAAACTTGCAAGGACCATAGTTAGTGTCATAGAGGCTTGCCACTCCCGTGGAGTAATGCATCGTGATCTTAAGCCTGAGAATTTTCTTTTCGTTGATGGCCATGAAGACTCCACCCTTAAGGCAATAGATTTTGGAATGTCAGTTTTCTTCAAACCAGGAGACATTTTCAGGGACGTGGTTGGAAGTCCTTACTATATCGCACCTGAAGTTCTATGTAGGCGCTATGGCCCAGAAGCTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTCTTATGTGGAACCCCTCCATTTTGGGGTGAATCGGAGCAAGATATATTTGAGGAGGTTTTGCATGGTGATCTTGATTTCTCTTCAGATCCTTGGCCAAATATCTCTGAAAGTGCCAAAGACTTGGTTAGGAAAATGCTTGTTAGAGATCCTAGAAAACGGATAACAGCACATGAAGTTCTTCGTCACCCTTGGATTCAGGTTGATGGAGTTGCCCCAGACAAGCCTCTTGATTCAGCAGTTTTGGGTCGCTTGAAGCAGTTTTCTGCAATGAACAAGCTCAAGAAAATGGCTCTAAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTTCTGGATTGAAAGAAACGTTTAAGATGATAGACACAGACAACAGTGGTCAAATCACTTTTGAAAAACTCAAGGTTGGACTGAAAACATTTGGTGCTAATCTCAGTGAATCTGAAATGGTCGACCTAATGCAAGCTGCAGATGTTGATAACAGTGGCGCAATTGACTATGGAGAATTCATAGCTGCGACATTGCATATAAACAAAATTGACAGGGATGATCATTTAGTTGCAGCTTTCTCGTATTTTGATAAAAAAGGAAGTGGCTACATCACTCAAGATGAGCTTCAACAAGCTTGTGAAGAATTTGGCATGGAGAATGTCTGCTTGGAGGAAATGATCAGAGAAGCTGATCAGAATAATGATGGCCGAATCGACTACAATGAATTCGTGGCTATGATGCAGAGAGGCAATGCAGATTTAGATAAGAGCGGTCTAAAGGGTAACTCTAGTTTTAGCATTGGATTTCGGGAGGCAGTATCAGTATGTTAA 1737 0.4185 MGGIEISEATSSVSTNPNTKALETVQEKPPEVVKIDKKETKPVLSNQENNNNKTSDEQIRRMEPAMRQSEAVRAIEPAKPKMPYYVKRVAIAAAGLQAESILLRKSGHLKEYYNLGPELGKGQYGTTFLCTEKATGKKYACKSIPKVKLVGNDDVEDVRREIQIMHHLAGCSNVISIKGAYEDGVAVHVVMEMCAGGELFDRIVERGHYTERKAAKLARTIVSVIEACHSRGVMHRDLKPENFLFVDGHEDSTLKAIDFGMSVFFKPGDIFRDVVGSPYYIAPEVLCRRYGPEADVWSAGVIIYILLCGTPPFWGESEQDIFEEVLHGDLDFSSDPWPNISESAKDLVRKMLVRDPRKRITAHEVLRHPWIQVDGVAPDKPLDSAVLGRLKQFSAMNKLKKMALRVIAENLSEEEISGLKETFKMIDTDNSGQITFEKLKVGLKTFGANLSESEMVDLMQAADVDNSGAIDYGEFIAATLHINKIDRDDHLVAAFSYFDKKGSGYITQDELQQACEEFGMENVCLEEMIREADQNNDGRIDYNEFVAMMQRGNADLDKSGLKGNSSFSIGFREAVSVC* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0401 578 MobiDBLite consensus disorder prediction 7 23 - -
Apr4g0401 578 ProSiteProfiles Protein kinase domain profile. 113 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0401 578 CDD EFh 419 478 IPR002048 GO:0005509
Apr4g0401 578 Pfam Protein kinase domain 114 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0401 578 Pfam EF-hand domain pair 431 479 IPR002048 GO:0005509
Apr4g0401 578 CDD STKc_CAMK 113 370 - -
Apr4g0401 578 MobiDBLite consensus disorder prediction 27 43 - -
Apr4g0401 578 CDD EFh 490 550 IPR002048 GO:0005509
Apr4g0401 578 PANTHER SERINE/THREONINE-PROTEIN KINASE 59 560 - -
Apr4g0401 578 Gene3D Transferase(Phosphotransferase) domain 1 199 395 - -
Apr4g0401 578 SMART efh_1 418 446 IPR002048 GO:0005509
Apr4g0401 578 SMART efh_1 524 552 IPR002048 GO:0005509
Apr4g0401 578 SMART efh_1 454 482 IPR002048 GO:0005509
Apr4g0401 578 SMART efh_1 490 518 IPR002048 GO:0005509
Apr4g0401 578 SUPERFAMILY EF-hand 400 551 IPR011992 -
Apr4g0401 578 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
Apr4g0401 578 SUPERFAMILY Protein kinase-like (PK-like) 111 372 IPR011009 -
Apr4g0401 578 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Apr4g0401 578 Pfam EF-hand domain pair 491 550 IPR002048 GO:0005509
Apr4g0401 578 ProSiteProfiles EF-hand calcium-binding domain profile. 486 521 IPR002048 GO:0005509
Apr4g0401 578 ProSiteProfiles EF-hand calcium-binding domain profile. 525 555 IPR002048 GO:0005509
Apr4g0401 578 SMART serkin_6 113 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g0401 578 Gene3D - 396 555 - -
Apr4g0401 578 ProSitePatterns EF-hand calcium-binding domain. 533 545 IPR018247 -
Apr4g0401 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Apr4g0401 578 Gene3D Phosphorylase Kinase; domain 1 116 198 - -
Apr4g0401 578 MobiDBLite consensus disorder prediction 1 59 - -
Apr4g0401 578 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Apr4g0401 578 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 59 560 - -
Apr4g0401 578 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0401 Apr-Chr4 3423826 3427476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0401 9 572 EF-hand Containing Proteins AT5G04870 68.641 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr4g0401 Pkinase 1.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0401 K13412 - gmx:100814475 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0401 4 3423826 3427476 Apr8g0909 8 10084295 10090636 PCT
Apr8g0705 8 6770001 6773713 Apr4g0401 4 3423826 3427476 PCT