Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0393 ATGAGCAACACAGGTGATACTAATTCCCCTGGTTTCCTTGGCTCCAGTAACATCAGTGGCTATAGCTATGGCATAGGAATTTCCATTGGAATTCTCTTGCTCATTATAACCATCACGCTAACATCTTACTTTTGCACCAGAATACAAGTGTCAACTGCTACATCTACTAGGAATAGGAGAAGTGCCCCTAATGCCCTTCAACCACATCACTCTATAGTTGATGTAAGTTTAGATGAAGCCACCATTTTGAGTTATCCAACCCTGTTGTATTCTGAAGCCAAGCTACAAAAATCTGATTCCACTGCAACATGTTGTTCCATATGTCTGGCTGATTACAAGGGTACTGATATGCTGCGTGTGTTACCTGGTTGTCGGCACCAGTTCCACATCAAGTGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCAGTTTGCAGAACATCTCCAATCCCAACACCACTTTCAACTCCTCTGGCTGAAGTTGTTCCATTAGCAAGCAGACAGGATTCCTAG 516 0.4341 MSNTGDTNSPGFLGSSNISGYSYGIGISIGILLLIITITLTSYFCTRIQVSTATSTRNRRSAPNALQPHHSIVDVSLDEATILSYPTLLYSEAKLQKSDSTATCCSICLADYKGTDMLRVLPGCRHQFHIKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRQDS* 172
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0393 171 Pfam Ring finger domain 105 147 IPR001841 -
Apr4g0393 171 SMART ring_2 105 146 IPR001841 -
Apr4g0393 171 CDD RING-H2_PA-TM-RING 104 147 - -
Apr4g0393 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Apr4g0393 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Apr4g0393 171 SUPERFAMILY RING/U-box 85 152 - -
Apr4g0393 171 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 8 169 - -
Apr4g0393 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 169 IPR045899 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Apr4g0393 Apr-Chr4 3363163 3363678 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0393 11 167 C3H Transcription Factor Family AT2G35910 64.780 2.04e-56 175
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0393 - - gmx:100811799 263.462
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0393 4 3363163 3363678 Apr8g0690 8 6566216 6566725 PCT