Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0392 ATGGCGATGCAAACTGTTTATGTTAAAGAACATGAGGGAAATGCACACAATTTTGTGGGGCAGTTGTCATCTGCAACTTCAGCACCTTGGTGGAGTGCCTTTGGATCTCAATCCGTTTATGGGGAGTCATGCGGCCAAATGAAACCCTTTTCATTGGAGCTTCCTACCTGCATGGACCAGCTTGCTGCCAACAAGTCATCAGCAAGAGGAGCTGAACAAGTGTTGGGTAAAGGACATACAACTCAGTTTACCATCTTTCCAGATGATAGCAAAATGTCAGATGGTGCACAAAAGCCTCAGACATCCATATCACTGCAGTCATCACTCACTGATTCTCACCCTCGTTTTGAGCTAGGATTTAGTCAGCCCATGATATATGCAAAATATCCTTATATGGATCAATTTTATGGGCTCTTCTCAACTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACATAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGCCGGCAGTCTCGTGCCAAAGCTGTACTTGATCAAAAATTGACTAAATGTCGCAAGCCCTATATGCATGAGTCGCGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAGGAGTTCTGTTAATGAAAATGGTAACAGTGGAAGGAAAGTGAATAAAAGTGTTGGTGAACAATTGCAGTCCAGTGGCTCTCAGAGTTCTGAAGTTCTTCATTCTGAGGCTGGAACTTTGAATTCATCAAAGGAGACTAATGGAAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGGAGGCCTTGATAGCTTTGGTAATCATCTTGGATCTGCTGTCCACTCTTTTGCAGACATGATAGGTGGTGGGCGTGGTATGATCATACCCCCCAAATGGGTTGCAGCAGCAGATAACTGCTGCAACCTTAAAGTTTGA 987 0.4417 MAMQTVYVKEHEGNAHNFVGQLSSATSAPWWSAFGSQSVYGESCGQMKPFSLELPTCMDQLAANKSSARGAEQVLGKGHTTQFTIFPDDSKMSDGAQKPQTSISLQSSLTDSHPRFELGFSQPMIYAKYPYMDQFYGLFSTYAPQISGRIMLPHNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDQKLTKCRKPYMHESRHLHAMRRPRGCGGRFLNTRSSVNENGNSGRKVNKSVGEQLQSSGSQSSEVLHSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDSFGNHLGSAVHSFADMIGGGRGMIIPPKWVAAADNCCNLKV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0392 328 MobiDBLite consensus disorder prediction 205 279 - -
Apr4g0392 328 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Apr4g0392 328 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 327 - -
Apr4g0392 328 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Apr4g0392 328 MobiDBLite consensus disorder prediction 217 279 - -
Apr4g0392 328 Gene3D - 160 220 - -
Apr4g0392 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 327 IPR001289 GO:0003700|GO:0006355
Apr4g0392 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Apr4g0392 328 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Apr4g0392 328 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0392 Apr-Chr4 3347564 3352058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0392 1 328 CCAAT-HAP2 Transcription Factor Family AT3G05690 46.821 2.12e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Apr4g0392 CBFB_NFYA 3.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0392 K08064 - gmx:100815382 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0392 4 3347564 3352058 Apr8g0688 8 6533574 6539460 PCT