Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0391 ATGCCTCACTTGTTACATTCACTTCTCAATTCTGAAACCACAACCTTCTCTCTCTCTATCTCAATGACTACTACAGCTTCTGTTTCCTCTTCTATCTGCAATAGAATCTACAACTTCTCCTTTACCCACTCTTCCATTTCACTCACCAGCAACTTCCCTCAAAGACCCGTATCCCAGAAACCTCTCAACCTCAACGTTAAATATCAAAGTTTCAGCCTTTCCTTTCTCCCACTTCACCGTCTTCACCCACCTTTTGCTGCCTTTGATGGATTAGAAGTGGCTCAAGACAGCACAGAGTCCCAAGAAGAAGAGTCAGAACCACAAACCTTTGAAAACCCACAACAAGAGGAAGAGCAAAGAGTTTCAGACTCAAACGATGCTGGAAGGCTCTATGTTGGAAACTTGCCATTTTCAATGACTAATTCTCAATTGGCTGAGATCTTTGGAGAAGCTGGCACTGTGATGTCTGTTGAGATTGTGTATGACCGTGTCACGGATAGAAGCAGAGGATTTGCATTTGTTACAATGGGGAGGGTTGAGGATGCTAAAGAGGCAATTGGAATGTTTGATGGCTCTCAAGTTGGTGGTAGAACTGTTAAGGTAAACTTCCCAGAGGTGCCCAAAGGAGGAGAAAGGTTAGTAATGCGACCAAAAATACGGAACAACTACAGAGGTTTTGTGGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGCTGGGGACTCACCTCACAGGGTCTTACAGAAGCTTTTGCAGAGCAGCCAGGTTTATTGAGTGCTAAGGTCATCTATGAGAGGGACAGTGGAAGATCTCGAGGCTTCGGCTTTGTTTCTTTTGAAACTGCTGAGGATGCAGCGGCTGCTTTGGAAGTTATGAATGGTGTGGATGTACAAGGTCGGCCCTTACGGTTGAATTTGGCTGAAGCGAGGGCGCCTTCATCTCCTCCAGTAATTGAGGAAAATGCAGGAAGCAGTGTTGATAGCTCGGAATTGCTGACTAGTGCCAGCACATGA 1014 0.4556 MPHLLHSLLNSETTTFSLSISMTTTASVSSSICNRIYNFSFTHSSISLTSNFPQRPVSQKPLNLNVKYQSFSLSFLPLHRLHPPFAAFDGLEVAQDSTESQEEESEPQTFENPQQEEEQRVSDSNDAGRLYVGNLPFSMTNSQLAEIFGEAGTVMSVEIVYDRVTDRSRGFAFVTMGRVEDAKEAIGMFDGSQVGGRTVKVNFPEVPKGGERLVMRPKIRNNYRGFVDSPHKIYAGNLGWGLTSQGLTEAFAEQPGLLSAKVIYERDSGRSRGFGFVSFETAEDAAAALEVMNGVDVQGRPLRLNLAEARAPSSPPVIEENAGSSVDSSELLTSAST* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0391 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Apr4g0391 337 MobiDBLite consensus disorder prediction 318 337 - -
Apr4g0391 337 PANTHER OS02G0815200 PROTEIN 21 319 - -
Apr4g0391 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 200 IPR000504 GO:0003723
Apr4g0391 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 303 IPR000504 GO:0003723
Apr4g0391 337 Gene3D - 89 212 IPR012677 -
Apr4g0391 337 CDD RRM_HP0827_like 129 205 - -
Apr4g0391 337 Gene3D - 216 316 IPR012677 -
Apr4g0391 337 SUPERFAMILY RNA-binding domain, RBD 124 205 IPR035979 GO:0003676
Apr4g0391 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 206 IPR000504 GO:0003723
Apr4g0391 337 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 21 319 - -
Apr4g0391 337 MobiDBLite consensus disorder prediction 311 337 - -
Apr4g0391 337 MobiDBLite consensus disorder prediction 96 111 - -
Apr4g0391 337 MobiDBLite consensus disorder prediction 94 125 - -
Apr4g0391 337 SUPERFAMILY RNA-binding domain, RBD 228 313 IPR035979 GO:0003676
Apr4g0391 337 SMART rrm1_1 129 202 IPR000504 GO:0003723
Apr4g0391 337 SMART rrm1_1 232 305 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0391 Apr-Chr4 3343622 3346069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0391 115 310 Eukaryotic Initiation Factors Gene Family AT3G16380 32.000 3.66e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0391 - - aprc:113861916 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0391 4 3343622 3346069 Apr4g0391 4 3343622 3346069 ECH
Apr4g0391 4 3343622 3346069 Apr8g0687 8 6528725 6530765 PCT