Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0389 ATGAACGACTTGTTAACGAGTTTCTTCTTCAAGGAGAAACAGCAACAACTGCAACAACAGCAACAACAAAAGGAGCACGTGATCGAAATGGAAGAGGGTGGCATGAACCTATTGGACAAGTTCTTGGAAGAAGTGGAATCGGTGAAGGAGGAGTTGAAGGAGCTGGAACACCTTCATCTAAGTCTTCGTGCTTCCAACCAGCATGGCAAGACCCTTCACAGCCCCAAAGCAGTTAAGGATCTTCGTTCTCGCATGGACCTTGACGTCGCTCTCTCTCTCACCAAAGCTAAGCTTGTCAAGGCTCGTTTGGAGGCTCTCGACCGGTCCAACCAAACCACCCGCTCCTTGCCCGATTGTGGACCCGGTTCGTATTCGGACCGGACCCGAACCGCTTTGGTTAGTGGGTTGAGGAAGAACTTGAAAGACTCGATGGAGAGTTTCAACAACCTAAGGGAGCAGATATCTTACGAGTATAGAGACACCGTACAACGTAGATACTATGCCGTTACTGGCGAGAATCCTGATGACAAAACCATTGACCTTCTCATCTCTACCGGTGAGAGTGAAACTTTCTTAAAGAAAGCTATCCAACAGCAAGGAAAAGCCACCATCATGACCACCATCCAAGAGATTCAGGAGAGGCATGGGACGGTCAAAGAGATAGAGAGAAGCCTAAACGAGCTGCACCAAGTGTTCTTGGACATGGCACTGCTGGTCCAAACGCAGGGTGAACAATTGGATGACATAGAGAGCCACGTGGCACTAGCCAATTCGTCGGTGAGTAAAGGGGTGCAGCAGTTGCAGGTTGTTAGGAATCAACAGAAGAACACTCGTCAATGGACCTGTTTTGCCATACTTCTACTGATTATCATATTAGTTATTGCTCTCCCTGTTGTTTTCAGAAACTGA 909 0.4785 MNDLLTSFFFKEKQQQLQQQQQQKEHVIEMEEGGMNLLDKFLEEVESVKEELKELEHLHLSLRASNQHGKTLHSPKAVKDLRSRMDLDVALSLTKAKLVKARLEALDRSNQTTRSLPDCGPGSYSDRTRTALVSGLRKNLKDSMESFNNLREQISYEYRDTVQRRYYAVTGENPDDKTIDLLISTGESETFLKKAIQQQGKATIMTTIQEIQERHGTVKEIERSLNELHQVFLDMALLVQTQGEQLDDIESHVALANSSVSKGVQQLQVVRNQQKNTRQWTCFAILLLIIILVIALPVVFRN* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0389 302 CDD SynN 38 195 IPR006011 GO:0016020
Apr4g0389 302 PANTHER SYNTAXIN 13 295 IPR045242 -
Apr4g0389 302 Gene3D - 192 300 - -
Apr4g0389 302 SMART SynN_4 33 159 IPR006011 GO:0016020
Apr4g0389 302 Pfam SNARE domain 244 295 IPR000727 -
Apr4g0389 302 SUPERFAMILY t-snare proteins 37 263 IPR010989 GO:0016020|GO:0016192
Apr4g0389 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Apr4g0389 302 SMART tSNARE_6 203 270 IPR000727 -
Apr4g0389 302 Coils Coil 38 65 - -
Apr4g0389 302 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Apr4g0389 302 PANTHER SYNTAXIN-121 13 295 - -
Apr4g0389 302 Pfam Syntaxin 40 243 IPR006011 GO:0016020
Apr4g0389 302 Coils Coil 10 30 - -
Apr4g0389 302 Gene3D - 37 165 - -
Apr4g0389 302 CDD SNARE_syntaxin1-like 207 268 - -
Apr4g0389 302 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0389 Apr-Chr4 3335255 3337310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0389 33 282 SNARE and Associated Proteins AT3G11820 66.000 5.99e-119 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0389 K08486 - gmx:100790221 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0389 4 3335255 3337310 Apr8g0686 8 6518083 6520617 PCT