Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0388 ATGGACAAGTTCTTCAACGACGTTGAAGAGATAAAGGAGGAGCTGAAGGAGTTGGAGCGTTTAAACCAGAGTCTCAAGAGGTCACACGAAAAGAGCAAAACCCTTTATCATGCCAACACCTTCAAGGACCTTCGATCCACCATGGACGCTGACGTGGCACTCACTCTCAAGAAAACCAAACTCATCAAGTTCAAGTTGGAAGCGCTGGAACGCTCCAACGACGCAAATCGGAATCTTCCCGGTTGCGGAGCCGGATCCTCCTCTGACCGGACCCGAACCAACGTCGTAAACGGGTTGAAGAAGAACCTCAAGGATTACATGGATAGCTTCAGTGAGCTTCGTCACCAGATCAACTCGGAGTACCGTGAAACAGTTCAACGCCGCTATTTCACCGTCACCGGCGAGAACCCTGATGACGAAACAGTTGACCTGTTGATCTCTACCGGTGAGAGCGAGAATTTCCTACGGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATTGAGGACACCATTAACGAAATTAAAGAGAGGCATAGTGCTGTAAAAGAGCTGGAGAAGAATCTCAAGGAGTTGTACAAGAGCTAA 585 0.4855 MDKFFNDVEEIKEELKELERLNQSLKRSHEKSKTLYHANTFKDLRSTMDADVALTLKKTKLIKFKLEALERSNDANRNLPGCGAGSSSDRTRTNVVNGLKKNLKDYMDSFSELRHQINSEYRETVQRRYFTVTGENPDDETVDLLISTGESENFLRKAIQEQGRGRIEDTINEIKERHSAVKELEKNLKELYKS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0388 194 Coils Coil 167 194 - -
Apr4g0388 194 SUPERFAMILY t-snare proteins 1 191 IPR010989 GO:0016020|GO:0016192
Apr4g0388 194 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 1 193 - -
Apr4g0388 194 Coils Coil 1 35 - -
Apr4g0388 194 Gene3D - 1 193 - -
Apr4g0388 194 PANTHER SYNTAXIN 1 193 IPR045242 -
Apr4g0388 194 Pfam Syntaxin 3 191 IPR006011 GO:0016020
Apr4g0388 194 Coils Coil 96 116 - -
Apr4g0388 194 CDD SynN 1 158 IPR006011 GO:0016020
Apr4g0388 194 SMART SynN_4 1 122 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0388 Apr-Chr4 3330122 3331747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0388 1 193 SNARE and Associated Proteins AT3G11820 71.503 9.29e-100 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0388 K08486 - jre:108982862 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0388 4 3330122 3331747 Apr8g0685 8 6511505 6513567 PCT