Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0385 ATGGACGAGATTGATGTTCCTTCGTTCTTTGTTTGCCCCATTTCGTTAGAAATCATGAAGGATCCGGTGACTGTCTCCACGGGTATAACCTACGACCGTGAAAGCATCGAGACGTGGCTATTTTCTAAGAAAAACAAGACATGTCCTGTCACCAAACAACCCTTGTTAGATTACAATGATCTCACTCCTAACCACACCCTTCGGAGACTGATTCAAGCATGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATTCCAACTCCTAAGCCTCCCGTAAACAAAAACCAGATTTCAAAGCTCCTCAAAGACGCTTCTCATTCACCTTCGATGCAGATTAAGTGCCTCCGAAAGCTTAAATCCATCGCTTCCGGAAGTGAAACAAACAAACGTTGCATGGAAGCATCGGGTGCTGTTGAATTCTTAGCATCAATTGTAGTGAACAACATCGATTCTTCAAATTTACCCGGGCTAGAGTCCAACCCAGATGATGGATTCGAGTTGAAAACAAGCGCAAGCGATGAAGCCTTAAGCTTGCTATATAATCTTCATTTATCTGAACCTGGGTTGAAGACTCTCCTAGCCTTCAAAAACGGGGAGTTTATAGATTCCTTAACAAGAGTATTGCAAAAGGGGTTCTTCGAATCACGAGCTTATGCAGTGTTCTTGTTGAAATCTATGTCTGAAGTGGCTGAACCAGTGCAACTATTGCATCTCAGAACTGAACTCTTCGTGGAATTAGTGCAAGTTTTGAAGGATCAGATTTCACAGAAGACATCAAAAGCGACACTCCATACACTGATTCAATTCTGCCCATGGGGGAGAAACAGGATCAAAGCGGTGGAAGCAGGAACGGTTCCTGTTTTGATAGAACTTCTTCTTGATTGTAAGGAGAGAAAGCCATGTGAAATGATGCTAGTGTTGTTGGATGTGCTGTGCCAGTGTGCTGAGGGACGAGCTGAGCTGTTGAGCCATGGAGCAGGACTTGCCATAGTGTCGAAGAAGATTCTAAGAGTTTCTACACTGGTAAATGATAGAGCTGTTAGGATTCTTTTGTCTATTTCCAAGTTCTCTGCGACTCCACAAGTTGTTCAGGAAATGCTGAAACTGGGTGTGGTGGCGAAACTGTGCTTGGTGCTTCAGGTAGAGAGTGGGAGCAAGGCCAAGGAGAAGGCAAGGGAGATACTCAAAATGCATACTCGATCATGGAGAGATTCTCCATGCATACCCAGCAATTTGCTCTCTTCATACCCAGCTTATGTGTGA 1266 0.4439 MDEIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIETWLFSKKNKTCPVTKQPLLDYNDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNKNQISKLLKDASHSPSMQIKCLRKLKSIASGSETNKRCMEASGAVEFLASIVVNNIDSSNLPGLESNPDDGFELKTSASDEALSLLYNLHLSEPGLKTLLAFKNGEFIDSLTRVLQKGFFESRAYAVFLLKSMSEVAEPVQLLHLRTELFVELVQVLKDQISQKTSKATLHTLIQFCPWGRNRIKAVEAGTVPVLIELLLDCKERKPCEMMLVLLDVLCQCAEGRAELLSHGAGLAIVSKKILRVSTLVNDRAVRILLSISKFSATPQVVQEMLKLGVVAKLCLVLQVESGSKAKEKAREILKMHTRSWRDSPCIPSNLLSSYPAYV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0385 421 SUPERFAMILY ARM repeat 98 395 IPR016024 -
Apr4g0385 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Apr4g0385 421 Gene3D - 95 409 IPR011989 -
Apr4g0385 421 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Apr4g0385 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 418 - -
Apr4g0385 421 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Apr4g0385 421 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Apr4g0385 421 CDD RING-Ubox_PUB 10 53 IPR045210 -
Apr4g0385 421 SUPERFAMILY RING/U-box 3 82 - -
Apr4g0385 421 PANTHER WDSAM1 PROTEIN 1 418 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0385 Apr-Chr4 3291388 3292995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0385 1 419 U-box Gene Family AT3G52450 58.486 5.74e-180 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0385 - - gmx:100811258 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0385 4 3291388 3292995 Apr4g0385 4 3291388 3292995 ECH
Apr4g0385 4 3291388 3292995 Apr8g0680 8 6391647 6392882 PCT
Apr8g0681 8 6426646 6427911 Apr4g0385 4 3291388 3292995 PCT