Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0384 ATGGATGAAATTGAAGTTCCTCGATATTTCATCTGCCCAATATCCCTTCAGATCATGAAAGATCCGGTAACTACTATTACAGCCATTACATACGACCGAGATAGCATTGAGCACTGGCTATTCACCAGCAACAACACCACTTGCCCAGTCACTAGACAACCGCTCCCAAGCGACTCTGACCTAACCCCAAATCACACCCTTCTGCGTCTAATCCAAACTTGGTGTACCCAAAATGCCTCGCATGGTATTCATAGGATTCCCACCCCTAAGCCACCGCTTGACAAGTTTCAAGTCCTTAGGCTCCTCAAAGACCTCGATGACCCCAAGCTTCAACTTGGAAAGATCAAGGAATTGGAATTTCTAGCATCACAGAATGAAAGGAATAAAAAGTTTTTACTACAGGCTGGTGTGCCAAAGGCCATGATCCTGTTCATATTTAATTGTTTTAGAAAAGGCCAAAGTGATAAAGGTCTAGAAGAAGCTTTAAGCTTACTTCAGTTTGTTAACGTTCCAGAAGAGGATATAAAGCTTCTTCTAGCGGAAAACGATCAAATATTGGATTCTCTAACGTGGGTTTTAGGCTGTGAGGTGAAAAATTCTATTGCTGTGAAATCTCGCGCAGTAATAGTGCTCAAAACCATCATGCAGAAAGCTAGCTCCACAGTAATGGAAAGACTGAAACCTGCACTGTTTGAAGGGACTGTGAAGATTTTACAATGTGGGACTACTCAACAAGGCTTGGATGCTGCGCTTCAAGTCTTGTTAAGTGCTTGCCAATGGGGAAGAAACAGGATCATGATTGTGGAAAGTGGTGCAGTTTTTGAACTCATAGAGATTGAATTAAAGGCACCTGAGAAGAGGATCACAGAGCTCAACGTGGAGATACTATTTCACCTGTGTTCTTGTGCCGATGGAAGAGCTCAGTTTCTTAGTCACAAAGGCGCCATTGCTTTGTTGACGGAGCGAATCTTCACGATTTCATCAGTGGTGGATGACCGAGCCATATTTATTCTTTCTTTGGTGTCTATGTTCTCTGCCACACCTGTGGTCCTTCAAGAAATGGTGGAGTTTGGAACTGTGTCAAAGCTTCGTAGGTTGCTTCAGAGTGATCATGGCACCTATCTTAAAGATAAAGCAAAGAAAATCCTTAATTCTCATGCTCAAGTTTGGAAAATTACTCATTGCATTGATTTCTTATCGTGA 1203 0.4239 MDEIEVPRYFICPISLQIMKDPVTTITAITYDRDSIEHWLFTSNNTTCPVTRQPLPSDSDLTPNHTLLRLIQTWCTQNASHGIHRIPTPKPPLDKFQVLRLLKDLDDPKLQLGKIKELEFLASQNERNKKFLLQAGVPKAMILFIFNCFRKGQSDKGLEEALSLLQFVNVPEEDIKLLLAENDQILDSLTWVLGCEVKNSIAVKSRAVIVLKTIMQKASSTVMERLKPALFEGTVKILQCGTTQQGLDAALQVLLSACQWGRNRIMIVESGAVFELIEIELKAPEKRITELNVEILFHLCSCADGRAQFLSHKGAIALLTERIFTISSVVDDRAIFILSLVSMFSATPVVLQEMVEFGTVSKLRRLLQSDHGTYLKDKAKKILNSHAQVWKITHCIDFLS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0384 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 397 - -
Apr4g0384 400 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Apr4g0384 400 SUPERFAMILY ARM repeat 98 384 IPR016024 -
Apr4g0384 400 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Apr4g0384 400 SUPERFAMILY RING/U-box 3 83 - -
Apr4g0384 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Apr4g0384 400 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Apr4g0384 400 CDD RING-Ubox_PUB 10 53 IPR045210 -
Apr4g0384 400 Gene3D - 97 391 IPR011989 -
Apr4g0384 400 PANTHER WDSAM1 PROTEIN 3 397 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0384 Apr-Chr4 3282774 3284049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0384 2 398 U-box Gene Family AT3G11840 42.630 9.85e-114 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0384 - - jre:109013610 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0384 4 3282774 3284049 Apr4g0384 4 3282774 3284049 ECH