Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0382 ATGGCTACATACTTTCATGGTAACTCCGAAATCCCATCAGGTGGTGCTGATGGACTCCAAACTCTCGTCCTCATGAATCCTGGTTACATCCACTACTCTGACGCACCGCCGCAGCCACCGCCTTCCCACGCTGCTGGCAACCTCGTATTCCTCAACGCTGCCACCGTTGCCAGCAACAACAACTCCTTCAGCTCTCACGCGCCACCTTCTCACACACAACAATTCGTTGGGATACCTCTCCCCGCTTCTCAAGACCTCAACCACCACTCCATGCACGCGCATCACGACGTCTCTGCCTTGCATGGCTTCCTGCCACGCATGCAGTACAATCCCTGGAACGCCATTGACCCCAACTCAGCGGCGCGTGACACCCCACGCGCGCAGCAGGGGCTGTCTCTGAGCCTCTCCTCGCAGCAGGCGGGGTTTGGGTCTTTTCGGGAGGGTCAGGCGCCGGCGATGTCAAGCGATGAGCTGCGCGTGTCTGGTGGGTCGCCGTCTTCCGCTTCTGGGGTTACTAATAATGGCGCTTCGGGTATTCAGAGTGTGCTTTTGAGCTCAAAGTATTTGAAGGCAACGCATGAGCTTCTAGAAGAGGTTGTGAATGTTAACAATGGGATTGGTACTGAATTGGCAAAGAAGAGTGGTGGACAGAGCAAGGTGATTGGGGAGTCATCTGCTGCAGCCAGTGGAGATGGTTCAGTTGGTGGGGAGGGAAGCGGGAAACGTAGCTCCGAGCTATCAACTGCTGAAAGACAAGAAATTCAGATGAAAAAAGCAAAGCTAATCAGCATGCTTGATGAGGTGGAGCAAAGGTATAGACAGTACCATCACCAGATGGAGATTGTGGTTTCTTCGTTTGAACAAGCTGCAGGGATTGGATCAGCGAGGACATACACTGCCCTTGCACTGCAAACAATCTCAAAGCAGTTTCGGTGTTTGAAGGATGCAATCACAGGCCAAATTCGAGCTGCAAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGAAAAATTGAAGGTTCAAGGCTCAAATACGTTGATCATCATCTACGGCAACAACGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCAGACAAGCACATGCTTGCAAAACAAACAGGGCTAACTAGGAGCCAGGTTTCGAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAAGAAATGTACTTGGAGGAGATGAAGGAGCATGAGCAAAATGGGTCTGAGGATAAGTCAAGCAAGAGCAATGATGATTCTTCTATGAAAATGGCAGCTCCACAAGAGAAAGGTCCTACCAATGAAACCGAAGCTAAGAGTTTTAGTTCTAAACAAGACGTTTCTAAGAGCCAGAACACTCCAATAGTATCAGTTTCTAGACCATCAACATCACCACTTGGTGGAAATGTAAGAAACCAATCAGGATTCAGCTTCATTGGGTCATCAGAACTAGAAGGGATCACACAAGGAAGTCCCAAGAAACCAAGAAACCATGAGATTGTGCATTCCCCTAATGGCATCCCTTCAATTAACATGGATGTCAAGCCTAATGAGGGAAACAATGAGCAACTCTCAATGAAGTTTGGAGAGGAAAGGCAAGGGAGAGATGGCTCTTCTTTTATGGGAAACCAAACAAACTTCATTGGTGGTTTTGGACAGTACCCTATTGGGGATATTGGTAGATTTGATGCAGAGCAGTTTACCCCAAGGTTTTCAGGTAATGGGGTTTCCCTCACTCTTGGTCTTGACTCTTTACCTGGAACCCATCAAACATTTCTCCCAAATCAGAACATTCAACTGGGTAGAAGTTTGGACATAGCAGAACCAAATGAGTTCGGTGCAATAAACACTTCCTCTCCTCACTCTACAGCTGCTTATGAGAGTATCAACATGCAAAACCCAAAGAGGTTTGCCGCACAATTGCTGCCAGACTTTGTTGCCTAA 2052 0.4805 MATYFHGNSEIPSGGADGLQTLVLMNPGYIHYSDAPPQPPPSHAAGNLVFLNAATVASNNNSFSSHAPPSHTQQFVGIPLPASQDLNHHSMHAHHDVSALHGFLPRMQYNPWNAIDPNSAARDTPRAQQGLSLSLSSQQAGFGSFREGQAPAMSSDELRVSGGSPSSASGVTNNGASGIQSVLLSSKYLKATHELLEEVVNVNNGIGTELAKKSGGQSKVIGESSAAASGDGSVGGEGSGKRSSELSTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHEQNGSEDKSSKSNDDSSMKMAAPQEKGPTNETEAKSFSSKQDVSKSQNTPIVSVSRPSTSPLGGNVRNQSGFSFIGSSELEGITQGSPKKPRNHEIVHSPNGIPSINMDVKPNEGNNEQLSMKFGEERQGRDGSSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIAEPNEFGAINTSSPHSTAAYESINMQNPKRFAAQLLPDFVA* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0382 683 MobiDBLite consensus disorder prediction 438 454 - -
Apr4g0382 683 Pfam Associated with HOX 182 318 IPR006563 -
Apr4g0382 683 SMART HOX_1 367 431 IPR001356 GO:0003677
Apr4g0382 683 MobiDBLite consensus disorder prediction 145 174 - -
Apr4g0382 683 MobiDBLite consensus disorder prediction 469 524 - -
Apr4g0382 683 SUPERFAMILY Homeodomain-like 368 434 IPR009057 -
Apr4g0382 683 Coils Coil 251 271 - -
Apr4g0382 683 MobiDBLite consensus disorder prediction 116 135 - -
Apr4g0382 683 MobiDBLite consensus disorder prediction 211 250 - -
Apr4g0382 683 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Apr4g0382 683 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 15 625 - -
Apr4g0382 683 MobiDBLite consensus disorder prediction 438 549 - -
Apr4g0382 683 CDD homeodomain 367 428 IPR001356 GO:0003677
Apr4g0382 683 SMART prehox3 177 319 IPR006563 -
Apr4g0382 683 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Apr4g0382 683 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 15 625 - -
Apr4g0382 683 MobiDBLite consensus disorder prediction 159 174 - -
Apr4g0382 683 Gene3D - 370 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0382 Apr-Chr4 3266766 3271492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0382 1 683 Homeobox Transcription Factor Family AT2G35940 50.933 1.22e-179 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr4g0382 POX 1.1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0382 - - gmx:100810901 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0382 4 3266766 3271492 Apr4g0382 4 3266766 3271492 ECH
Apr4g0382 4 3266766 3271492 Apr8g0679 8 6378068 6383186 PCT