Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0353 ATGTCGATAAACCACTGCTCGTCGGACACAGCAGAAACGAGGCTAAGGTGGAGTCAGCAACACGCCACGTGGATGAATAATCCTCACACTCCGCGTTTCAATCTCAACAACCAAGAACAAGACGAAGTAGACGACGTCGTTGAGCAAGGCATCTCCCGAGAAGAAGAAGAAGAAGAAGAGAAGGAAGCGATGTTCGAGAAGCCATTGACGCCAAGCGATGTGGGGAAACTGAACCGACTCGTGATCCCAAAACAGCACGCCGAGAAGTACTTCCCACTCGACTCGATGGACACGAAGGGACTCTTACTGAGTTTCGATGACGAGTCAGGTAAGTGCTGGCGCTTCCGTTACTCTTATTGGAACAGTAGTCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTACGTTAAGGACAAACGCCTCCACGCCGGCGACGTCGTTTCCTTCCACAGACAGCGCATCCATCCCCACCGCTTCTTCATCACCTCCACCCGCCGCCACCTCTCTCCCCCCGCGCACGTTACCACCGCCACTTCACCACCCTTCTATTCTGCGATTCCTTATCCTACGCAACCTCACTCTATTCATGCAGGTGGAGGGTCCCACTGCCAGGGTGAGAAGGAAACGACAGCGGGAGGAAACAGTTGGAGTTTGAGTTCGAGTTCAAGTTCAAGTTCAAGTTGCAGGGTGTTAAGGCTGTTTGGTGTGAACATGGAATGCCAACCTCATAATGATTCCCAAACCTCAACACCCGAATGCTCCTATAACATTATGTCGTCAAACCAGCCTACACTTACCCAACACTTATACCATCAACCCTCTTATTCTTCTTCTTCCAACCCTCACCATCACATGCTACGTCAACAACCATACTAG 876 0.508 MSINHCSSDTAETRLRWSQQHATWMNNPHTPRFNLNNQEQDEVDDVVEQGISREEEEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLDSMDTKGLLLSFDDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVSFHRQRIHPHRFFITSTRRHLSPPAHVTTATSPPFYSAIPYPTQPHSIHAGGGSHCQGEKETTAGGNSWSLSSSSSSSSSCRVLRLFGVNMECQPHNDSQTSTPECSYNIMSSNQPTLTQHLYHQPSYSSSSNPHHHMLRQQPY* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0353 291 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 18 259 - -
Apr4g0353 291 Gene3D - 59 172 IPR015300 -
Apr4g0353 291 MobiDBLite consensus disorder prediction 194 224 - -
Apr4g0353 291 ProSiteProfiles B3 DNA-binding domain profile. 65 165 IPR003340 GO:0003677
Apr4g0353 291 MobiDBLite consensus disorder prediction 207 224 - -
Apr4g0353 291 SUPERFAMILY DNA-binding pseudobarrel domain 62 162 IPR015300 -
Apr4g0353 291 CDD B3_DNA 64 153 IPR003340 GO:0003677
Apr4g0353 291 MobiDBLite consensus disorder prediction 271 291 - -
Apr4g0353 291 SMART B3_2 65 165 IPR003340 GO:0003677
Apr4g0353 291 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 18 259 IPR044800 GO:0003700
Apr4g0353 291 Pfam B3 DNA binding domain 65 152 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0353 Apr-Chr4 2998358 3000082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0353 58 254 RAV Transcription Factor Family AT5G06250 50.000 8.26e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr4g0353 B3 1.4e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0353 - - gmx:100802734 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0353 4 2998358 3000082 Apr4g0353 4 2998358 3000082 ECH
Apr4g0353 4 2998358 3000082 Apr8g0647 8 5964695 5966799 PCT