Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0350 ATGGCCGCCGCCAGAAGAATCATTGGGTCCAATAAGACCTTGTTGCCGTCCAATAAGACCTTGTCGCCTTCTCTTCTTTCTTTTCGCAGGGGAATTGCTTTCAAGCTTTTCGTCGGAGGATTGTCCTTCTGCACAACAGAGAAAGCATTGTCAGATGCGTTTTCCAATTACGGGCAAGTTATTGAAGCTAAAGTTGTAACAGATAGGGTGTCAGACAGACCAAAAGGATTTGGGTTTGTCACCTTCGCTTCACAAGATGAGGCCGAAAATGCCATAACACAGATGAATCGAAAAGCACTAAATGGACGTGTTATTTTTGTTGATTATGCAAAACCCAATGTCAACACAGGTGGTGGAATGCCAATTGCCAGAGGACCTCCTGCAGATCCTTGA 393 0.4478 MAAARRIIGSNKTLLPSNKTLSPSLLSFRRGIAFKLFVGGLSFCTTEKALSDAFSNYGQVIEAKVVTDRVSDRPKGFGFVTFASQDEAENAITQMNRKALNGRVIFVDYAKPNVNTGGGMPIARGPPADP* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0350 130 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 1 128 - -
Apr4g0350 130 Gene3D - 27 127 IPR012677 -
Apr4g0350 130 SMART rrm1_1 35 108 IPR000504 GO:0003723
Apr4g0350 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Apr4g0350 130 PANTHER TRANSFORMER-2-RELATED 1 128 - -
Apr4g0350 130 SUPERFAMILY RNA-binding domain, RBD 34 124 IPR035979 GO:0003676
Apr4g0350 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0350 Apr-Chr4 2975618 2977026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0350 34 111 Eukaryotic Initiation Factors Gene Family AT2G23350 32.051 1.75e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0350 - - var:108327579 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0350 4 2975618 2977026 Apr4g0350 4 2975618 2977026 ECH