Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0335 ATGGATACATCAAATCCTGCGGCCTTTGTCAACGCAGAACTGTTACACTTTTATGTTGGAAGGAGGGTTCGGGCACTGATACAGGTTGTGCGATCTGATGGTGGCGCTGTCGTTGGAAAATCAACAGATGAGAAGCAGCTGGTTGTAAAAGGATCACCTCCACCTACTCCTCTTACAAATTTTGTAGAAGTTATTGGTATTGTTGATAGTGATAAGTCAATTCGTGCTGAGATATGGACCAATTTTGGTGATGCAATTGATATGGTCAGCTACAATAAGCTTTGCCAGCTTGCAAATGGAGAATTTAAACACTTGTTCCTATGA 324 0.4167 MDTSNPAAFVNAELLHFYVGRRVRALIQVVRSDGGAVVGKSTDEKQLVVKGSPPPTPLTNFVEVIGIVDSDKSIRAEIWTNFGDAIDMVSYNKLCQLANGEFKHLFL* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0335 107 Pfam Replication factor A protein 3 1 103 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Apr4g0335 107 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Apr4g0335 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Apr4g0335 107 CDD RPA3 6 99 - -
Apr4g0335 107 Gene3D - 1 107 IPR012340 -
Apr4g0335 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0335 Apr-Chr4 2873859 2875694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0335 1 107 Core DNA Replication Machinery Family AT4G18590 66.355 2.87e-53 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0335 K10740 - gmx:100306641 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0335 4 2873859 2875694 Apr4g0335 4 2873859 2875694 ECH