Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0334 ATGCACAAAATGCCTGGGACAAGGCAGAGAGATGTAACAGCCCAAAATCCAGAGTCTCCAGAGAGGAACAGTGAGCCTGAAAAACCTACAGATTCCGATGAGCAGGTAGACCTTGATGGAGACAATGATCAAGAGGAGACAATAGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAAGAAGAGGAGGAAGAGGAAGAGGAGGTGGAGGAGGGGGAGGATGAAGAAGAGACTAAGCCCTCGGATGTCGAAGATGGGATGAAAGTGGCAGATACTGAGGATGAAGTTGAGAAAAAGAAACATGCTGAGCTTCTTGCTCTTCCACCTCATGGGTCAGAAGTCTACATTGGGGGCATTCTGCAAAAAGTTTCTGAAGAAGATTTAAGAGTCTTTTGTCAGTCTGTGGGAGAAGTTTTGGAGGTTAGGATTATGAAGGGAAAAGAATCTGGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACGAAGGAATTGGCATCTAAGGCTATTGACAAGCTAAACAACTCTGAATTTAAGGGAAGAAAAATAAAATGCTCAACGTCTCAGGCTAAGCATAGGTTGTTCATTGGTAATGTTCCTAGAAATTGGACTGAAGAAGATATGAAGAAAGTTGTTGCAGAGATTGGGCCTGGAGTCATTTCTGTGGAACTGTTGAAGGATCCACAGAGCTCTGGCCGTAATAGGGGGTTTGCCTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAATTCAAACTTTAAACTTGACAGTAATGCTCCAACAGTGAGCTGGGCTGATCCAAGGAATTCTGAATCCTCTGCAGTCTCTCAGGTAAAAGCATTGTATGTAAAGAACCTTCCAGAAAACATTACTCAGGATCGACTAAAGGAGCTATTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTCCTGCCAAAGCTGGACAAGAAAAAAGCAGATTTGGTTTTGTGCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCATTGAAGAATACTGAGAAATATGAAATTGATGGTCAAACTTTGGAGTGTTCACTTGCAAAGCCACAGGCAGATCAGAAGTCATCTGGGACAGCAAATTCACAGAAGTCTATTGTACTTCCCACATATCAACCTCCTCTTGGTTATGGTATGATTGGAGGTGCCTATGGTGCTATTGGTGCAGGATATGGTGCTGCTGGCTTCGCACAACCACCTATGTATGGTACCGGAGCAACCCCTGCTGGCATGGCAATGATGCCGATGCTTTTACCAGATGGAAGGATTGGATATGTATTCAATTGCAACTGA 1362 0.4325 MHKMPGTRQRDVTAQNPESPERNSEPEKPTDSDEQVDLDGDNDQEETIEEEVEYEEVEEEEEVEEEEEEEEEEEEEEVEEGEDEEETKPSDVEDGMKVADTEDEVEKKKHAELLALPPHGSEVYIGGILQKVSEEDLRVFCQSVGEVLEVRIMKGKESGEAKGYAFVTFKTKELASKAIDKLNNSEFKGRKIKCSTSQAKHRLFIGNVPRNWTEEDMKKVVAEIGPGVISVELLKDPQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLDSNAPTVSWADPRNSESSAVSQVKALYVKNLPENITQDRLKELFEHHGKITKVVLPPAKAGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGTANSQKSIVLPTYQPPLGYGMIGGAYGAIGAGYGAAGFAQPPMYGTGATPAGMAMMPMLLPDGRIGYVFNCN* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0334 453 Coils Coil 47 88 - -
Apr4g0334 453 Gene3D - 41 201 IPR012677 -
Apr4g0334 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 366 IPR000504 GO:0003723
Apr4g0334 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 269 IPR000504 GO:0003723
Apr4g0334 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 193 IPR000504 GO:0003723
Apr4g0334 453 MobiDBLite consensus disorder prediction 36 89 - -
Apr4g0334 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 283 IPR000504 GO:0003723
Apr4g0334 453 MobiDBLite consensus disorder prediction 21 35 - -
Apr4g0334 453 SUPERFAMILY RNA-binding domain, RBD 118 375 IPR035979 GO:0003676
Apr4g0334 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Apr4g0334 453 MobiDBLite consensus disorder prediction 1 97 - -
Apr4g0334 453 PANTHER GEO13361P1-RELATED 16 450 - -
Apr4g0334 453 Gene3D - 283 401 IPR012677 -
Apr4g0334 453 Gene3D - 202 282 IPR012677 -
Apr4g0334 453 SMART rrm2_1 122 195 IPR003954 GO:0003676
Apr4g0334 453 SMART rrm2_1 296 369 IPR003954 GO:0003676
Apr4g0334 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Apr4g0334 453 SMART rrm1_1 122 195 IPR000504 GO:0003723
Apr4g0334 453 SMART rrm1_1 202 279 IPR000504 GO:0003723
Apr4g0334 453 SMART rrm1_1 296 369 IPR000504 GO:0003723
Apr4g0334 453 SUPERFAMILY RNA-binding domain, RBD 202 287 IPR035979 GO:0003676
Apr4g0334 453 CDD RRM_SF 123 195 - -
Apr4g0334 453 PANTHER - 16 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0334 Apr-Chr4 2864654 2871433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0334 123 453 Eukaryotic Initiation Factors Gene Family AT1G71770 25.707 7.00e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0334 K13161 - gmx:100798476 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0334 4 2864654 2871433 Apr4g0334 4 2864654 2871433 ECH