Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0324 ATGGAGTTGAAAGAGATTCAGAGACTAGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAACCCTGCCACCGGTCACGCCGGTATCCCACTCGTCTTTGCTTCTTGCAGCGGCGACAAAACCGTCCGAATCTGGGAGCAGAACCTCTCCTCTGGCCTTTGGGCCTCAAAGGCCGTTTTGGAAGAAACGCACACTCGAACCGTTCGATCGTGCTCGTGGTCACCGTCGGGGAAACTCTTGGCAACTGCAAGCTTCGATGCCACCACTGCCATATGGGAGAATGTTGGCGGTGATTTTGAGTGCGTCTCTACTTTGGAGGGACATGAGAATGAAGTAAAGAGTGTGTCGTGGAATGCGTCTGGAACGTTGCTTGCGACATGTAGTAGGGATAAATCGGTTTGGATATGGGAAGTGCAACCGGGGAATGAGTTTGAGTGTGTGTCAGTTTTGCAAGGACATACGCAGGATGTGAAAATGGTGAAGTGGCATCCCACCGAGGATATCTTATTTTCGTGTAGCTATGATAATAATGTTAAGGTTTGGGCAGATGAAGGTGATAGTGATGATTGGCAGTGTGTTCAAACTCTTGGAGAACCCAATAATGGTCACACTTCTACTATTTGGGCCCTCTCCTTCAATGCTAGTGGAGACAAAATGGTTACCTGTAGTGACGATCTTACCCTGAAGGTATGGGAATCAGAAAACATCGGGATGCAATCTGGTGGTGGATTTGCACCTTGGAGGCATCTTTGCACTCTTTCAGGGTATCATGATCGGACTATTTTCTCTGTTCATTGGTCAAGAGAAGGTATCTTTGCCAGTGGAGCTGCTGATGATGCTATACGGCTTTTTGTGGATGACAGTGAAAGTCAGGTTGGTGGTCCTCTGTACAAGTTGCTGCTGAAGAAGGAGAAGGCCCATGACATGGATGTAAATTCGGTGCAGTGGAGCCCTGGGCAGCATTAG 969 0.485 MELKEIQRLEGHTDRVWSLDWNPATGHAGIPLVFASCSGDKTVRIWEQNLSSGLWASKAVLEETHTRTVRSCSWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVKWHPTEDILFSCSYDNNVKVWADEGDSDDWQCVQTLGEPNNGHTSTIWALSFNASGDKMVTCSDDLTLKVWESENIGMQSGGGFAPWRHLCTLSGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDSESQVGGPLYKLLLKKEKAHDMDVNSVQWSPGQH* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0324 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 233 IPR001680 GO:0005515
Apr4g0324 322 CDD WD40 5 319 - -
Apr4g0324 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 147 IPR001680 GO:0005515
Apr4g0324 322 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 2 319 - -
Apr4g0324 322 ProSitePatterns Trp-Asp (WD) repeats signature. 125 139 IPR019775 -
Apr4g0324 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 9 47 IPR001680 GO:0005515
Apr4g0324 322 SUPERFAMILY WD40 repeat-like 3 320 IPR036322 GO:0005515
Apr4g0324 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 106 140 - -
Apr4g0324 322 Pfam WD domain, G-beta repeat 64 93 IPR001680 GO:0005515
Apr4g0324 322 Pfam WD domain, G-beta repeat 146 182 IPR001680 GO:0005515
Apr4g0324 322 Pfam WD domain, G-beta repeat 191 232 IPR001680 GO:0005515
Apr4g0324 322 Pfam WD domain, G-beta repeat 101 137 IPR001680 GO:0005515
Apr4g0324 322 Pfam WD domain, G-beta repeat 5 46 IPR001680 GO:0005515
Apr4g0324 322 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 1 322 IPR028608 GO:0016226|GO:0097361
Apr4g0324 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 151 182 - -
Apr4g0324 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 94 IPR001680 GO:0005515
Apr4g0324 322 PANTHER WD40 PROTEIN CIAO1 2 319 IPR028608 GO:0016226|GO:0097361
Apr4g0324 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
Apr4g0324 322 SMART WD40_4 247 286 IPR001680 GO:0005515
Apr4g0324 322 SMART WD40_4 54 94 IPR001680 GO:0005515
Apr4g0324 322 SMART WD40_4 190 233 IPR001680 GO:0005515
Apr4g0324 322 SMART WD40_4 2 47 IPR001680 GO:0005515
Apr4g0324 322 SMART WD40_4 144 183 IPR001680 GO:0005515
Apr4g0324 322 SMART WD40_4 99 138 IPR001680 GO:0005515
Apr4g0324 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 233 - -
Apr4g0324 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 182 IPR001680 GO:0005515
Apr4g0324 322 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Apr4g0324 322 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Apr4g0324 322 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Apr4g0324 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 9 47 - -
Apr4g0324 322 Gene3D - 32 322 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0324 77 284 U-box Gene Family AT2G33340 26.794 6.31e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0324 K24730 - gmx:100778826 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0324 4 2798054 2804815 Apr4g0324 4 2798054 2804815 ECH