Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0315 ATGGCGGAAGAGCACCGATGCCAAGCGCCCGAAGGACACAGGCTCTGCGCCAACAACTGCGGCTTCTTCGGCAGCCCAGCCACCATGGATCTCTGTTCCAAATGCTACAGAGATATCCGTTTGAAGGAACAAGAGCAAGCCAAAACCAAATCCACCATCGAAGCCGCTCTATCCTCTTCCGTCGCGGCCTCTGCGGTCGCGCAATCCGCTGTTGAATCTCTCCCTCAACCTCCGGCGTTGGCATCGCCGGCGGCCTCGCCCGATCCATCGGACTCTGCTCCAGCGGTTCAGACGAACCGGTGCGGCACGTGTCGGAAGCGCGTGGGGTTGACCGGGTTCAAGTGCAGGTGTGGAACGACGTTTTGTGGGACCCATAGGTATCCGGAGAAACACGCGTGTGGCTTCGATTTCAAGGCGGTGGGAAGAGAAGAGATCGCACGAGCGAATCCCGTGATCAAAGCGGAAAAGCTAGAAAAGATTTAA 483 0.5776 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDIRLKEQEQAKTKSTIEAALSSSVAASAVAQSAVESLPQPPALASPAASPDPSDSAPAVQTNRCGTCRKRVGLTGFKCRCGTTFCGTHRYPEKHACGFDFKAVGREEIARANPVIKAEKLEKI* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0315 160 ProSiteProfiles Zinc finger AN1-type profile. 95 141 IPR000058 GO:0008270
Apr4g0315 160 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Apr4g0315 160 SMART AN1_Zf_4 101 138 IPR000058 GO:0008270
Apr4g0315 160 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Apr4g0315 160 SUPERFAMILY AN1-like Zinc finger 89 155 IPR035896 -
Apr4g0315 160 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 160 - -
Apr4g0315 160 Gene3D - 1 64 - -
Apr4g0315 160 MobiDBLite consensus disorder prediction 72 96 - -
Apr4g0315 160 Pfam AN1-like Zinc finger 101 137 IPR000058 GO:0008270
Apr4g0315 160 Gene3D - 78 156 IPR035896 -
Apr4g0315 160 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 160 - -
Apr4g0315 160 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 57 - -
Apr4g0315 160 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0315 Apr-Chr4 2721947 2723150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0315 1 160 C2H2 Transcription Factor Family AT3G52800 53.529 5.10e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0315 - - gmx:100527251 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0315 4 2721947 2723150 Apr4g0315 4 2721947 2723150 ECH
Apr4g0315 4 2721947 2723150 Apr8g0611 8 5588408 5589847 PCT