Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0306 ATGAAAGTCATCGCTGCGTATTTGCTCGCTGTCTTGGGAGGCAACACTGCCCCTTCCGCCGATGACCTAAGGGACATCCTTGGCGCTGTTGGAGCAGAAGCGAATGATGACAATATCAGTAACTTCTTGTCCGAAGTGAAGGGCAAAGATATTGCAGAGGTTATTGCCGCCGGTAGGGAACAATTAGCCTCCGTGCCTTCTGGCGGTGGAGCCGCCGTTGCCGTGGCCCCTGCTCCCGGAGGAGGTGGTGGTAGTGCTCCGGCCGCTGCCGAATCGAAGAAAGAGGAAAAGGTGGAGGAGAAGGAGGAATCAGATGACGATATGGGTTTCAGTCTATTTGATTAA 345 0.5391 MKVIAAYLLAVLGGNTAPSADDLRDILGAVGAEANDDNISNFLSEVKGKDIAEVIAAGREQLASVPSGGGAAVAVAPAPGGGGGSAPAAAESKKEEKVEEKEESDDDMGFSLFD* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0306 114 MobiDBLite consensus disorder prediction 66 114 - -
Apr4g0306 114 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
Apr4g0306 114 Pfam 60s Acidic ribosomal protein 18 113 - -
Apr4g0306 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Apr4g0306 114 Gene3D - 1 59 IPR038716 -
Apr4g0306 114 CDD Ribosomal_P2 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Apr4g0306 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0306 Apr-Chr4 2650842 2652802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0306 1 114 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 65.789 8.21e-31 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0306 K02943 - gmx:100787024 131.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0306 4 2650842 2652802 Apr4g0306 4 2650842 2652802 ECH