Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0297 ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTTCCTGAATCCCATCAACACCCACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAGTCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCTACTACTAACAGATTTCCCAGGATGGGAAGTTATTTCAGCTTGGCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTAGCCGGTGCTGCTGTTCCTCCTGAGCTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCCCTTTTTCCTTCATCACCCTCTCCAACATTACCAACCTCCTTCAGTGTTGCCATCTGGGTATTGGGGTAGAGCAGCCATGGATCCAGAGCCCGGTCGTTGCCGGAGAACCGACGGGAAGAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAGCTAGTGCTTGTGGTGGTGGTGGATCTTTGGGTGGTGCTTCTTCCCTTTCTTCACCGCCACTGGCTACTGCTTCACTCAAATCCCCTTTTGATCTTCTTCATCTTAATGAACGTTCGTCGGGGACCAAGAATGAAGATAAGAGCTTGTTTGATAATGAAGATCATGTGGGTGGGGATGGAAGATCAGGTGGCCATATGCTGAGGCATTTCTTTGATGATTGGCCACGATCACTGCAAGAATCTGACAACGCTGAAAACAATGCTGGAAGGTTGAACTCAGCCACATGCCTCTCTATTTCAATGCCTGGAAATACTTCATCGGATGTGTCATTGAAGTTGTCCACTGGCTATGCAGAGGATCCGGGCCCAACAAATGAGACGGGGGACCTTCAGGCTCAGGCAGAACAATTGCAGCTGAATTGGGCCGGAGGGTGGGCTGCTTCTAGTCAAGTGGCTTCTATGGGAGGGCCACTTGCTGAGGCACTCAGATCTTCCACTTCAACTTCGTCTCCCACTAGTGTTTTGCATCAGTTGCCTCGTGGTTCTGTATCTGAGACCAGTTTCATTAGCACCTAA 1137 0.4943 MDFHLKQWRNQHESEEQHSTKMPKLLPESHQHPQSSASALPLFVPESNSKVSTLSDSTLATTNRFPRMGSYFSLAQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPPFFLHHPLQHYQPPSVLPSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPASACGGGGSLGGASSLSSPPLATASLKSPFDLLHLNERSSGTKNEDKSLFDNEDHVGGDGRSGGHMLRHFFDDWPRSLQESDNAENNAGRLNSATCLSISMPGNTSSDVSLKLSTGYAEDPGPTNETGDLQAQAEQLQLNWAGGWAASSQVASMGGPLAEALRSSTSTSSPTSVLHQLPRGSVSETSFIST* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0297 378 MobiDBLite consensus disorder prediction 1 25 - -
Apr4g0297 378 MobiDBLite consensus disorder prediction 171 206 - -
Apr4g0297 378 ProSiteProfiles WRC domain profile. 140 184 IPR014977 -
Apr4g0297 378 MobiDBLite consensus disorder prediction 1 37 - -
Apr4g0297 378 Pfam WRC 141 183 IPR014977 -
Apr4g0297 378 PANTHER - 11 378 IPR031137 GO:0005634|GO:0006351|GO:0032502
Apr4g0297 378 SMART QLQ_2 70 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr4g0297 378 MobiDBLite consensus disorder prediction 341 378 - -
Apr4g0297 378 Pfam QLQ 72 104 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr4g0297 378 MobiDBLite consensus disorder prediction 347 378 - -
Apr4g0297 378 MobiDBLite consensus disorder prediction 226 248 - -
Apr4g0297 378 ProSiteProfiles QLQ domain profile. 71 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr4g0297 378 PANTHER GROWTH-REGULATING FACTOR 3 11 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0297 Apr-Chr4 2527080 2529456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0297 1 365 GRF Transcription Factor Family AT3G52910 51.385 2.06e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Apr4g0297 WRC 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0297 - - gmx:100814842 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0297 4 2527080 2529456 Apr4g0297 4 2527080 2529456 ECH