Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0293 ATGCGTTCCAGCAACGGTAACACTGCATCAAGCAGCAGAGCCTCTTCTTCTTCTGCAGCAACAGGGCGCCACCCTGTGTATCGAGGAGTGAGGCGTAGGAGTAGTGGAAAATGGGTTTCTGAAATCCGTGAGCCCAAGAAGCCCAACAGGATTTGGTTAGGGACATTTGCTACACCTGAAATGGCAGCTATTGCTTATGATGTGGCAGCGCTTGCTCTTAAGGGTAAGGATGCTGAACTTAACTTCCCTAACTCCGCTTCTTCCTTGCCCGTCCCTGCATCTTCCTCTGCCCGTGATATTCAGATGGCTGCAGCTAGTGCTGCAGCTGCTGTTGGGGCAGCCAATGATGCAATAACGGGCATTGATGGAAGCCGAGGAGGGAACGTTTCAGTCTCTGTCGCACAAGAGATTTCAGGGGGGAATCAGTTTGTGGATGAGGACTTGATCTTTGATATGCCTAATATTCTGGTCAATATGGCTGAAGGAATGTTGCTTAGTCCTCCTCGTTTTGACATTGCTGGTAATGAATATGAATATGGTGAAGATCCTAATCTCTGGGGTTTCCCTTACTACCCTTAA 579 0.487 MRSSNGNTASSSRASSSSAATGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSSARDIQMAAASAAAAVGAANDAITGIDGSRGGNVSVSVAQEISGGNQFVDEDLIFDMPNILVNMAEGMLLSPPRFDIAGNEYEYGEDPNLWGFPYYP* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0293 192 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Apr4g0293 192 MobiDBLite consensus disorder prediction 1 41 - -
Apr4g0293 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 189 - -
Apr4g0293 192 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Apr4g0293 192 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Apr4g0293 192 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g0293 192 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Apr4g0293 192 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Apr4g0293 192 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Apr4g0293 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 6 189 - -
Apr4g0293 192 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Apr4g0293 192 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0293 Apr-Chr4 2461778 2462429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0293 22 189 AP2-EREBP Transcription Factor Family AT2G36450 65.143 6.80e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g0293 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0293 - - gmx:100799620 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0293 4 2461778 2462429 Apr4g0293 4 2461778 2462429 ECH
Apr4g0293 4 2461778 2462429 Apr8g0594 8 5367371 5368141 PCT
Apr8g0595 8 5379553 5380296 Apr4g0293 4 2461778 2462429 PCT