Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0292 ATGGAAATGGAGGATCAGCATCATCATCATCATCACCATCATCATGAACAGCAGCAACAGTATGGCATCACTGATCTGAGGCAACTAGTGAATGGACCAAGGTCTACCCATTTCCCCTCAATACCGCAGCAACCCACGGCGGAGCTCTTCCCCGCCGGCCACCCGAATCTTGCAGCCACACAACACTACGAGATGATGATGTTTGGTCGTCAAGTAGCTGACATAATGCCTCGTTGTCTTCATGACTTTGCCTCCAACGATTCGGCCACTAACACTAGCATCGCTGTTGCCACTCCTACCACCACCACTAGTGCTTCAACTCCTCCTCTTAGTTGCTTAGAGGCTGAGACCGCAGGTTGCATCGGCGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTCGTCTTGACTCTAAATTCAAAGAGGCTAATCAGAAGGGCCCGCTTTGGGATGAAGTTTCTAGGATCATGTCAGAAGAACATGGATATCAAAGGAGTGGTAAGAAGTGCAGGGAGAAGTTTGAGAACCTGTACAAATATTACAAAAAGACAAAGGAAGGAAAGGCAGGAAGACAGGATGGAAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTGTATGGTGAAAACAGTAACCAAGCCTCAGTTCCAGAAACCAATTTCGTTAGCAGCAGCCTTCGTTTTCAAACAAGCAGTCACAACCCCTCTCAGACAAATCAAGAAATGTTTCAGTCTCAGAAGCATTGTGATAGCCTCAGCCTCACTAACTCCACAGAATTGGACACGTCATCTTCTGATGACAATGATCATAATAGCATTGGGGGACACAAAGACAATGACTCCGTGGAGAAGAGGAGAAAGAGGGTGAGTGGAAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACACACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAATGGTTGGACAAACTCACAAAGACACTGGAACAGAAGGAAAAGGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAGACAAGAGGCTGCAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCTTTGCAAAAATTAACAGGAAGTGAGATAAAGAGTACTCAATCTCCTGAGGGTCTAATGGTAACTGGAATTCAAAGCCACAATGAAAACCAGAATGAAGATGGAAGTGAAATACTAAATAGCACTGCTAGAGGTGTTGAAAGCTGGCCAGAATCTGAGGTTACAAGGCTTCTACAGTTGAGGGCTGAGATGGAGGCAAGGTTTGTGCAAAGTGGGTGTTCGGAAGAGGTTATGTGGGAGGAAGTAGCAACCAAAATGTCTTGTTTTGGCTACGAAAGGAGTGCTTTGATGTTCAAAGAGAAATGGGAAAGTGTCAACAACTACTCAAAGAATGCTAAGGATGGAAACAAGAAGCGCAAAGAAAACTCAAGAACCTGTTTTTATTTCGATAACAGTGACCAGTCTTCTCTATATAACCAAGGAGGTGCCTATTGTGATATCAATGATCAAAGGCAAGAGACTGGAAGGCTGCAAACAAATGATGGTTCTTCACCTTCGAATTCTAATGTTGGAAATGCAGTTGCGGGTGATAACTGCTTTCCCTTCTTCATGGCCGAGGGGGGAAATTTGTGGGAGAACTACAGCTTAAAGGTTAATAAAGCAAACCAAAACCAGTGA 1752 0.4515 MEMEDQHHHHHHHHHEQQQQYGITDLRQLVNGPRSTHFPSIPQQPTAELFPAGHPNLAATQHYEMMMFGRQVADIMPRCLHDFASNDSATNTSIAVATPTTTTSASTPPLSCLEAETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFVSSSLRFQTSSHNPSQTNQEMFQSQKHCDSLSLTNSTELDTSSSDDNDHNSIGGHKDNDSVEKRRKRVSGRSWKVKIKDFIDTQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMEALQKLTGSEIKSTQSPEGLMVTGIQSHNENQNEDGSEILNSTARGVESWPESEVTRLLQLRAEMEARFVQSGCSEEVMWEEVATKMSCFGYERSALMFKEKWESVNNYSKNAKDGNKKRKENSRTCFYFDNSDQSSLYNQGGAYCDINDQRQETGRLQTNDGSSPSNSNVGNAVAGDNCFPFFMAEGGNLWENYSLKVNKANQNQ* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0292 583 ProSiteProfiles Myb-like domain profile. 122 187 IPR001005 -
Apr4g0292 583 MobiDBLite consensus disorder prediction 237 295 - -
Apr4g0292 583 MobiDBLite consensus disorder prediction 272 295 - -
Apr4g0292 583 Gene3D - 130 192 - -
Apr4g0292 583 Gene3D - 427 489 - -
Apr4g0292 583 Pfam Myb/SANT-like DNA-binding domain 129 215 IPR044822 -
Apr4g0292 583 Pfam Myb/SANT-like DNA-binding domain 426 511 IPR044822 -
Apr4g0292 583 CDD GT1 129 194 - -
Apr4g0292 583 PANTHER - 30 574 - -
Apr4g0292 583 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 30 574 - -
Apr4g0292 583 SMART sant 126 189 IPR001005 -
Apr4g0292 583 SMART sant 423 486 IPR001005 -
Apr4g0292 583 MobiDBLite consensus disorder prediction 1 21 - -
Apr4g0292 583 CDD GT1 427 491 - -
Apr4g0292 583 Coils Coil 319 346 - -
Apr4g0292 583 MobiDBLite consensus disorder prediction 237 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0292 Apr-Chr4 2443660 2446688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0292 16 578 Trihelix Transcription Factor Family AT5G03680 45.246 3.26e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr4g0292 Myb_DNA-bind_4 9.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0292 - - gmx:100813245 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0292 4 2443660 2446688 Apr4g0292 4 2443660 2446688 ECH
Apr4g0292 4 2443660 2446688 Apr8g0593 8 5340396 5367571 PCT