Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0288 ATGGACATGGAGAGCACGCGTAGATCGTTGGATAGATCGAGAGAACCGGGCACTAAGAAGCCTCGATTGATCGACGAACTCGACCGTAGTGCTCGACCGTTACCTCAACGACAAGCAGGGTCTGGGGTGGTTACTACGTTGGCGTCTACGAGGTTTCGAACAAACGACAGAGACTCCGAAAGCAGCGATTCGGGTCGCGGCGGCGGGTACCACCCGCAGCCACCGCCGCACCAAGAGCTCGTGACTCAGTATAAGACCGCGCTCGCTGAGCTCACTTTCAATTCGAAGCCGATAATTACAAACTTGACTATCATTGCTGGAGAGAATCTATCTGCTGCTAAGGCAATTGCTGCCACTGTTTGTGCAAACATTCTAGAGGTTCCAAGTGATCAAAAGCTGCCATCTCTTTACCTCTTAGATAGTATTGTTAAGAATATCGGGCGGGATTATATAAAATATTTTGCTCCCAGACTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTTCTGTCCATACAAGTATGAAGCATCTTTTTGGAACATGGAAAGGAGTGTTTCCTCCTCAGACCCTTCAGGTGATTGAGAAGGAACTTGGTTTTGCACCTGCAGTCAACGGTTCAGCTTCAGTTTCTGCTACAGTCAGGAGTGATTTGCAGTCTCAACGCCCTCCTCACAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGAGTAAAGGAGTAGTTAATGATATGACTGGAGCTATTTTAAACCCAAATGAGGATTCAGAGAGGCCAGATAGAGCTTTGGTTGCTGCAAGACCATGGCTGGATCCTAGGATTAACATGCATAATAATCAGCATACTCATAGAGATGCATTTAATGATTCTCTTCCTGAAAAGAGTATCAGTGGGTCATATGGAAGCAGTGAATATAGTTCTGGCATTTCAAGTAATTTGGTCTCAGGGGTTGGAAGAACTGGAAGTAGACTCATTGATTTAGGGCATGACAAAACTTGGTTCAAAACAGGTAGTGGTGTTGCAGAGAACATATCTGGGCAAAAAAATGCTTTCAGTCTCCAGCCTGGTTTTTCAAATCATGAAGCACCAAAGTCGATGAATTTGGATGCACATCGTCAGCAAACACAGAACCTAACTAACATAAGAAGCAATGTCATGTCAAGTAACTGGAAGAATTCTGAGGAAGAGGAGTTCATGTGGGATGAGATGAACTCTGGTTTGATTGATCATGGACCCAATGTTTCTGGCAACTTGAGCACAGACACGTGGATGGTTGATGATGAAAATTCGGAAGGTGAAGATCACCTCCAAATTGCACGCCCTTTTGGGGCAAAGGTTGATAGAGAATTATCCACCGTTAAGAAACAACTACCTGGTTCTGGGGGCCATCCACCATCATCATGGCAATTGCAGAAGCAGCATTCAATTGATAAGTTGAATCTAAAGTCAGGTCACTCAGAAGGATTTGTGTCCAGTCTTAGTGGCTTACCAGGCAATACAAGTTCTTTGGCTGTCAGGATGGGGAATCGATCGTTTACGCCAAATGCAACAGCAGGAATGGCCAAAGTTGTTGGACAACAATTTGATTCTGGGGGAACCGAATCCCCTTCTGGGCAGTCACCTTTGCGACAACAGTCTCCAACACTGCCAGTAACAGTACACCACCCTCCAATGCAAAATTTGGCTGAGCAAGAAATTCCCCAGAATCTTAAACCATCTCAATTTTTGGGAGGTCTTAGAAGTCAACATAGTAGAGATCCCTCACCTACCAGCCGTCCCAATGTTCAGGTTGGTCATGTGCGAAGATCCCAGGAAAAGGACATGCAGGGTCCATTATCTTCTGTAACTTCTTTTCGACCAAAGCTTCAGCAACAGCAGCTGCCCCCTTCTCAGACTGAAATTACCTCTAAAACTAAGAAGCCACCCCAGACTAAAGTTTCTTTAGTCAGAGAAACTTCAGAACAGTCCACAAATAATTTTTCGGCTGTAGCTATCAAGAGTGGAATCATTCCCAACAAGTCTACTGCCAGTAATCTTCCTACGTCAAGTAATCTGGATGCAAGGAATCTTCCATCTCAATCTGGGATTCAGCCTACTCGGTCTGGTAGGCCTTCCCCTACCTCATTAATTTCTTCACGGCCTGTGGTTGCATCACCATCTTCATTAGGTCCTCTGAATAATGATTCATCTACACTCCCAAAAATACTTCAAGGAAAGGCTGGACAACCACAAAGGATTTCCTCTCAACCACCTGCTTCCTCTAACACGAGCAGTTCCTCAGGTCTGAGCTTAAATGCTGCCAATAGTAGTACCGTAAATCCAATTGCAAACCTTTTAAGCTCGTTAGTTGCAAAGGGTTTGATATCTGCCGAATCAGAATCACCAAATATGGTACCAAACGAGGTGCCAATGGGATCCAAAGATCAAACTGAAATCATTACCACCAGTTGCTCTTTGCCAGTTACATCAGTTTCTGGTTCGGCAGCTGTCCCAGTAACATCTTCCAGAGATGTAGTAGATGCTGCTACAAAAACTGCTGTTGCCTTGCCTCAATCAACTAGCACTGAAATCAGAAATCTCATTGGCTTTGAATTTAGACCTGACATAATTCGAGAATTCCAACCTCCTGTAATTAAAGAATTATTTGATGATCTCCCACATCATTGCAGAATATGTGGTATTAGGCTTAAACAAGAAGAACAGTATAATAGACACTTAGAGTGGCATGCCACAAGAGAAAAAGAACAAAATGGTCTAATCAGGGCATCAAGAAGATGGTATCCAAAGTCAAGTGACTGGATTGCTGGCATTTCAGAATATACATCGGAGTTAGAGTTTAGTGACTCTGTTGATGTACGTGACAAAAAATCAGACAGCAGTCAATTGGATACTTTGGTTCTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTTGAGGATGTGTATTGTGAGGAAAAGGACGAGTGGATGTTCAAAGGGGCAGTTTACATGAATTACTTAGATAGCAATAGTGAGATGGAAAGTAGAAATATGGGTCCCATCATTCATGCCAGATGCTTATCAGAGAACTCAATATCAAGTGCCACCAATACGGATAATGATTAA 3144 0.4377 MDMESTRRSLDRSREPGTKKPRLIDELDRSARPLPQRQAGSGVVTTLASTRFRTNDRDSESSDSGRGGGYHPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAPRLPEVFCKAYRQVDPSVHTSMKHLFGTWKGVFPPQTLQVIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVNDMTGAILNPNEDSERPDRALVAARPWLDPRINMHNNQHTHRDAFNDSLPEKSISGSYGSSEYSSGISSNLVSGVGRTGSRLIDLGHDKTWFKTGSGVAENISGQKNAFSLQPGFSNHEAPKSMNLDAHRQQTQNLTNIRSNVMSSNWKNSEEEEFMWDEMNSGLIDHGPNVSGNLSTDTWMVDDENSEGEDHLQIARPFGAKVDRELSTVKKQLPGSGGHPPSSWQLQKQHSIDKLNLKSGHSEGFVSSLSGLPGNTSSLAVRMGNRSFTPNATAGMAKVVGQQFDSGGTESPSGQSPLRQQSPTLPVTVHHPPMQNLAEQEIPQNLKPSQFLGGLRSQHSRDPSPTSRPNVQVGHVRRSQEKDMQGPLSSVTSFRPKLQQQQLPPSQTEITSKTKKPPQTKVSLVRETSEQSTNNFSAVAIKSGIIPNKSTASNLPTSSNLDARNLPSQSGIQPTRSGRPSPTSLISSRPVVASPSSLGPLNNDSSTLPKILQGKAGQPQRISSQPPASSNTSSSSGLSLNAANSSTVNPIANLLSSLVAKGLISAESESPNMVPNEVPMGSKDQTEIITTSCSLPVTSVSGSAAVPVTSSRDVVDAATKTAVALPQSTSTEIRNLIGFEFRPDIIREFQPPVIKELFDDLPHHCRICGIRLKQEEQYNRHLEWHATREKEQNGLIRASRRWYPKSSDWIAGISEYTSELEFSDSVDVRDKKSDSSQLDTLVLADENQCLCVLCGELFEDVYCEEKDEWMFKGAVYMNYLDSNSEMESRNMGPIIHARCLSENSISSATNTDND* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0288 1047 MobiDBLite consensus disorder prediction 463 482 - -
Apr4g0288 1047 SUPERFAMILY ENTH/VHS domain 76 204 IPR008942 -
Apr4g0288 1047 MobiDBLite consensus disorder prediction 537 562 - -
Apr4g0288 1047 MobiDBLite consensus disorder prediction 582 607 - -
Apr4g0288 1047 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Apr4g0288 1047 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1044 - -
Apr4g0288 1047 ProSitePatterns Zinc finger C2H2 type domain signature. 898 918 IPR013087 -
Apr4g0288 1047 MobiDBLite consensus disorder prediction 536 564 - -
Apr4g0288 1047 Gene3D - 73 201 IPR008942 -
Apr4g0288 1047 MobiDBLite consensus disorder prediction 1 78 - -
Apr4g0288 1047 Pfam CID domain 85 194 IPR006569 -
Apr4g0288 1047 SMART 558neu5 79 201 IPR006569 -
Apr4g0288 1047 MobiDBLite consensus disorder prediction 582 665 - -
Apr4g0288 1047 CDD CID_Pcf11 81 193 - -
Apr4g0288 1047 MobiDBLite consensus disorder prediction 1 32 - -
Apr4g0288 1047 MobiDBLite consensus disorder prediction 681 775 - -
Apr4g0288 1047 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1044 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Apr4g0288 1047 MobiDBLite consensus disorder prediction 616 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0288 Apr-Chr4 2411518 2418505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0288 51 416 C2H2 Transcription Factor Family AT4G04885 39.031 1.40e-57 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0288 K14400 - gmx:100788958 1513.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0288 4 2411518 2418505 Apr4g0288 4 2411518 2418505 ECH