Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0287 ATGAACCCAAAACAACTAAATGATCCTAAATTAACAGCTCCAGAGGGAACACTTGAATTATCTTCCATTCTCTTGGATTACGATGAAACATTGCTGTCAAGCTCTTTTCTACGTGATACCTTTTCTATTCCTTCTCCTCCTTCCCAGTTACCTTCATCAAGCGCTGAGTTTGAGAAGGTAATTAGTTTTCCACAGCCTCTTGAATGCTTGCAAGGGAACCCAGTTCCTCCATTTCTATCCAAGACTTTCGATCTCGTCCAAGATCCATCCATTGATCCCATTGTATCCTGGGCATTCACTGGTGTTAGTTTCGTGGTGTGGGATCCTACCCTGTTTGCAAGACACGTTTTGCCAAGGCATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACTTATGTGGGTATTGCTGTAACACACAATTGTCCTTCACTTTTTTTTCCCTTTCCTCCCCCTTTCTTGCCCTTTCTATTAGCTGCTCCGTCCATTCTCAAGTCACTTGGCATTTGTATTCAGGGATTCCGCAAGATTGACACTGATAAGTGGGAATTTTTTAATGAAGCTTTCCAACGAGGAAAGAAAGATCTTCTGAAGAACATCCAAAGGCGCAGGCCACCTCAGCCACAACAGGTTGGGAGCAATATTGGGCCTTACACTGATGCAACGAAGTCTGGACTTGAATTTGAGATAGAAGGACTGAGGAAGGAGAGAAGGGTGTTAATGCAAGAGGTGGTTGAGTTACAGCAACAGCAGCTAACAATGCTACAACGTGCAAGACAAGTGAATCAAAGGCTCCAATCTGCAGAGCAAATACAAAAACAAACGGTTTCTTTCTTGGCAAAGCTGTTTGAAAACCCATCATTTTCAACTCACCTTAAGCATGAGAAGGAACAAAGAGACATGGGTTCTCATAGAGTAAAAAGGAAGTTTGTCAAGCAGCACCAAGACCAAACAGAAATATCAGATTCTTTGAATGAAGGGAAGATTGTGAGATATCAACCTGATTGGAAAAACATAACCATCTCTTCTGAAATGCCAGATATATATTCAGTTTCCACTGAACAGTCTCCAAATTACCTTTCACAGGTTTTGGCAAAAGAAGGTAAAGAGAATCTGATACCAGGTGAATTGGCTGTAGTGCATGAGGTTATGCCAACTGTGGAAATCATAGAAGGGTCATCAAACTTTGGACTTGAAGGTACCCTTTTCAAAGGGAAAAATGTTATGAGCTTAAGTCAACAAATTCTTGCAGAAGATTTTGTTTCTTTCCCAGAGGCTTTGACCAAGGAGGCAAAAGTTCCAGAGTTTTCACCTCTTGGAACTGAAAGCATCATGAAATTGGAAGATATATGGAACACCAACTTTAATGTTAGTGGCGCTCTTTCAAGCTCAGGGAGTGAGCCGTGGGAAAATCCTATCCATCATGAAGTGCTAGAATTTGGAGTCATAAGTGGTATGTCAGAGATGTGGGATATTGGCTCTCTGCGAGCGAAAGGAACTTTCCTAACTGATGGGTCAACACCTTTGAAATAG 1542 0.415 MNPKQLNDPKLTAPEGTLELSSILLDYDETLLSSSFLRDTFSIPSPPSQLPSSSAEFEKVISFPQPLECLQGNPVPPFLSKTFDLVQDPSIDPIVSWAFTGVSFVVWDPTLFARHVLPRHFKHNNFSSFVRQLNTYVGIAVTHNCPSLFFPFPPPFLPFLLAAPSILKSLGICIQGFRKIDTDKWEFFNEAFQRGKKDLLKNIQRRRPPQPQQVGSNIGPYTDATKSGLEFEIEGLRKERRVLMQEVVELQQQQLTMLQRARQVNQRLQSAEQIQKQTVSFLAKLFENPSFSTHLKHEKEQRDMGSHRVKRKFVKQHQDQTEISDSLNEGKIVRYQPDWKNITISSEMPDIYSVSTEQSPNYLSQVLAKEGKENLIPGELAVVHEVMPTVEIIEGSSNFGLEGTLFKGKNVMSLSQQILAEDFVSFPEALTKEAKVPEFSPLGTESIMKLEDIWNTNFNVSGALSSSGSEPWENPIHHEVLEFGVISGMSEMWDIGSLRAKGTFLTDGSTPLK* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0287 513 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 64 500 - -
Apr4g0287 513 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 64 500 IPR027725 -
Apr4g0287 513 Pfam HSF-type DNA-binding 78 206 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g0287 513 PRINTS Heat shock factor (HSF) domain signature 78 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g0287 513 PRINTS Heat shock factor (HSF) domain signature 116 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g0287 513 PRINTS Heat shock factor (HSF) domain signature 129 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g0287 513 SMART hsfneu3 74 206 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g0287 513 SUPERFAMILY "Winged helix" DNA-binding domain 73 206 IPR036390 -
Apr4g0287 513 Gene3D - 71 207 IPR036388 -
Apr4g0287 513 Coils Coil 226 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0287 Apr-Chr4 2406389 2408864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0287 63 347 HSF AT5G03720 49.135 1.23e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr4g0287 HSF_DNA-bind 4.1e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0287 K09419 - gmx:100788429 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0287 4 2406389 2408864 Apr4g0287 4 2406389 2408864 ECH