Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0270 ATGGATTGGCATGAGAGCACAAGACCATTTGTTCCTCGGCCTGAGTCTTCCTTAAGCTTCTTCTACAACTACAACAACCACCCTTATCCAGAAGTGGAAATGAAACAAGCGACATTGACGGAGACAACGCAAAGGTTGGTTCCGGCAATGGAGAACGGGAACAAAGAGAAGAAGAAGCGATTAACAAGTAATCAGATAGAGTTATTGGAGAGGAGTTTCCAGGAGGAGATAAAGTTGGATCCTGAAAGGAAGATGAAACTTTCGAGAGAGTTAGGTCTTCAGCCTCGTCAAATCGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAGGCCAAACAGCTTGAGCATTTGTACGATGTTCTTAAACACCAATTTGATATCATCTCCAAGGAAAAGCAAAAGCTTCAGGAAGAGGTTATGAAGTTGAAGGCAATCCTAAGAGAGCAAGGTTTTAAGACGCAAACACTTATGGGTTATACAGAAATATCAGGGGAAGAAACAGTAGAAAGCACATCAGAGGCGCTTAGGGGTTCCACTTCCAACAAGTTTGCAGAGGGTTACTGTTCTTTCACTGTGGATGATTATAACACAGTTTCATTGCCTCACTGCCAATGGCCTGCTATGCCTTATTATCCCTAA 639 0.4304 MDWHESTRPFVPRPESSLSFFYNYNNHPYPEVEMKQATLTETTQRLVPAMENGNKEKKKRLTSNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKHQFDIISKEKQKLQEEVMKLKAILREQGFKTQTLMGYTEISGEETVESTSEALRGSTSNKFAEGYCSFTVDDYNTVSLPHCQWPAMPYYP* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0270 212 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Apr4g0270 212 Gene3D - 49 119 - -
Apr4g0270 212 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Apr4g0270 212 SMART HOX_1 54 116 IPR001356 GO:0003677
Apr4g0270 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 207 IPR045224 GO:0003700
Apr4g0270 212 SUPERFAMILY Homeodomain-like 53 122 IPR009057 -
Apr4g0270 212 Pfam Homeobox associated leucine zipper 112 146 IPR003106 GO:0006355|GO:0043565
Apr4g0270 212 Coils Coil 118 145 - -
Apr4g0270 212 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Apr4g0270 212 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Apr4g0270 212 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Apr4g0270 212 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 207 - -
Apr4g0270 212 CDD homeodomain 55 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0270 Apr-Chr4 2262990 2265020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0270 52 148 Homeobox Transcription Factor Family AT2G36610 63.810 3.03e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr4g0270 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0270 - - gmx:100807872 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0270 4 2262990 2265020 Apr4g0270 4 2262990 2265020 ECH
Apr8g0572 8 5114627 5116677 Apr4g0270 4 2262990 2265020 PCT