Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0260 ATGGCGGTTCCTCCGTCGGTCGCCACCACTCCGGCGTCTCTCTACGTCGGCGACCTCCATCCTGAAGTCTCCGACGCTCATCTGGTCGACGAATTCTCAGAGTTCAAGAGCCTTACCTCCGTTCGCGTTTGCAGAGACTCCTCCACCGGCAAATCCCTCTGTTATGGTTACGTCAACTTCGTTTCGCTTCAAGACGCAATTCGTGCAATCGAGCTGAAGAATAATTCTGTGCTGAATGGAAAAGTGATAAGGGTGATGTGGTCGCGTCGTGATCCTGATGTAAGGAAAAGTGCCATAGGGAACTTGTTTATTAAGAACTTACCCGAATCAACAGATAATGCCGCTCTGTATGATACATTCAAAAAGTTTGGGAATATTTTGTCCAGCAAAGTTGTCGTGTCTGAGGATGGGAAGAGCAAGGGACACGGATTTGTGCAATTTGAATCAGAAGAATCTGCAATTACTGCTATCGAGAAGCTGAATGGCTCCACTATTGGTGATAAGCAGATATATGTTGGGAAGTTTGTCAAAAAAAGTGATCGCATTCAGTCAGGCCCTGATGCCCAATATACAAATTTGTACATGAAGAATTTGGATCCAGATATTACAGAGGCCACTCTGCAGGAAAAGTTCTCTTCTTTTGGGAAAATTGTGAGCTTGGCTATTGCAAAGGACGACAATGGGATGTCAAAGGGTTTTGGCTTTGTAAACTATGATAACCCAGATGATGCTAAAAGGGCATTGGAAACAATGAATGGTTCACAATTAGGTTCAAAGATTCTGTACGTAGCTAGAGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCATCATCAATTCGAGGAGAAACGCAAGGAACAAATCTTGAAATATAAGGGATCAAACATTTATGTGAAGAACATTGATGATAATGTAAGTGATGAAGAACTGCGAGATCATTTCAGTGCATGTGGCAATATAACTTCTGCAAAAGTTATGAGAGATGACAAAGGGATAAGTAAAGGGTTTGGGTTTGTCTGCTTCTCCACTCCCGAGGAGGCGAACAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTAGCCCAGAGGAAAGAGGATAGACAAGCACAGTTGCAGCTCCAGTACGCACAACAAATACCAGGACTAGCTGCACCTTCAGCTGCCATTATCCCTGGTGGATATCCCCCTTACTACTATACAGCTACTAGTGTTATTTCACATGTGCCTCCTCGAGGTGGGCTAATGTATCAACCTCTGGCATTGAGGCCAGGATGGAGGACTAATGGCTTTGCTCCCCCGGCTAGATCATTTCAACAATCACCTGTTCCTGCAGTGAGTAACAACTTTGTTTCTAACAATGCTAGGCAGCATAGGCAAAACAGGGGCAGGGTGAATGGGCATACAATATCACAGGGAAATACTCACTCTGGTACTTATTTTCCAAATGCCCAGCAGATTTCTCAGTCAGTGGTCTCTTCCAGGGAGTCGAGTACTCAGCAGAGAACCGGACAGGCTAAGTACATACCTAATGGACGCCGGGAGATGGAAAAAGGATCTGGATTCTCATCTGGTGGTTCATACTCTGGAGCTTCGCAGGGTTCAGAAATACTGCATAGCATGCTTGCTGCTGCTGCTCCTGAGCAGCAGAAAGAGATACTCGGGGAGCATCTTTACATGCTTGTTCATAAACTCAAGCCTAGCCTAGCAGCGAAGATAACAGGGATGCTCTTGGAGATGGACAACGGAGAATTGCTGCTTCTCCTGGAATCGCCAGAGTCTCTTTCTGCCAAGGTTGAAGAAGCTGTCCAAGTGCTCAAGAACTCTAAGACCAAAGTCTCTGGCCAGGATGTACTTCATTCAAATTACCTTTCTGCTGAGGTTGCAGTGAACTGA 1917 0.4528 MAVPPSVATTPASLYVGDLHPEVSDAHLVDEFSEFKSLTSVRVCRDSSTGKSLCYGYVNFVSLQDAIRAIELKNNSVLNGKVIRVMWSRRDPDVRKSAIGNLFIKNLPESTDNAALYDTFKKFGNILSSKVVVSEDGKSKGHGFVQFESEESAITAIEKLNGSTIGDKQIYVGKFVKKSDRIQSGPDAQYTNLYMKNLDPDITEATLQEKFSSFGKIVSLAIAKDDNGMSKGFGFVNYDNPDDAKRALETMNGSQLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGNITSAKVMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQQIPGLAAPSAAIIPGGYPPYYYTATSVISHVPPRGGLMYQPLALRPGWRTNGFAPPARSFQQSPVPAVSNNFVSNNARQHRQNRGRVNGHTISQGNTHSGTYFPNAQQISQSVVSSRESSTQQRTGQAKYIPNGRREMEKGSGFSSGGSYSGASQGSEILHSMLAAAAPEQQKEILGEHLYMLVHKLKPSLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNYLSAEVAVN* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0260 638 SMART poly_2 553 616 IPR002004 GO:0003723
Apr4g0260 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Apr4g0260 638 SUPERFAMILY PABC (PABP) domain 545 625 IPR036053 GO:0003723
Apr4g0260 638 Coils Coil 263 283 - -
Apr4g0260 638 CDD RRM2_I_PABPs 99 174 IPR045305 -
Apr4g0260 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Apr4g0260 638 PANTHER RNA BINDING PROTEIN 542 623 - -
Apr4g0260 638 PANTHER RNA BINDING PROTEIN 6 536 - -
Apr4g0260 638 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
Apr4g0260 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Apr4g0260 638 MobiDBLite consensus disorder prediction 464 536 - -
Apr4g0260 638 CDD RRM4_I_PABPs 293 371 - -
Apr4g0260 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Apr4g0260 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Apr4g0260 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Apr4g0260 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Apr4g0260 638 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 614 IPR006515 GO:0003723
Apr4g0260 638 SUPERFAMILY RNA-binding domain, RBD 290 382 IPR035979 GO:0003676
Apr4g0260 638 Pfam Poly-adenylate binding protein, unique domain 548 613 IPR002004 GO:0003723
Apr4g0260 638 PANTHER POLYADENYLATE-BINDING PROTEIN 542 623 - -
Apr4g0260 638 PANTHER POLYADENYLATE-BINDING PROTEIN 6 536 - -
Apr4g0260 638 SUPERFAMILY RNA-binding domain, RBD 5 93 IPR035979 GO:0003676
Apr4g0260 638 Gene3D - 100 173 IPR012677 -
Apr4g0260 638 MobiDBLite consensus disorder prediction 464 514 - -
Apr4g0260 638 SMART rrm1_1 13 86 IPR000504 GO:0003723
Apr4g0260 638 SMART rrm1_1 192 264 IPR000504 GO:0003723
Apr4g0260 638 SMART rrm1_1 101 173 IPR000504 GO:0003723
Apr4g0260 638 SMART rrm1_1 295 367 IPR000504 GO:0003723
Apr4g0260 638 SMART rrm2_1 295 367 IPR003954 GO:0003676
Apr4g0260 638 SMART rrm2_1 13 86 IPR003954 GO:0003676
Apr4g0260 638 SMART rrm2_1 192 264 IPR003954 GO:0003676
Apr4g0260 638 SMART rrm2_1 101 173 IPR003954 GO:0003676
Apr4g0260 638 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 541 618 IPR002004 GO:0003723
Apr4g0260 638 CDD RRM1_I_PABPs 13 92 - -
Apr4g0260 638 Gene3D - 276 382 IPR012677 -
Apr4g0260 638 Gene3D - 176 275 IPR012677 -
Apr4g0260 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Apr4g0260 638 Gene3D - 539 632 - -
Apr4g0260 638 Gene3D - 2 98 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0260 Apr-Chr4 2190745 2194930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0260 12 636 Eukaryotic Initiation Factors Gene Family AT2G36660 53.175 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0260 K13126 - gmx:100779547 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0260 4 2190745 2194930 Apr4g0260 4 2190745 2194930 ECH
Apr4g0260 4 2190745 2194930 Apr8g0563 8 5019416 5024628 PCT