Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0254 ATGGATGAGAAGGAAGCCAATCCTGCAATGGAATCATATGTCTTCCCTCTTGTTATCTCTGCTGCTGGCATACTTTGCTCTACTCTAGTAATAGCAGTATACAATTGCATCCTCTTAAGGTACTTTGTTATGCCTTCAAGACTGCAACGCAGGAACAACAGAAATAGAAGCCAAATGAAGAATAGTGGGGTCCATGAGGAAATTCTTAACAAAATCCCAGTTTTCTCTATCTCACCTCAAACAAGTGGTGTTTTTCATTTGGACCATGATGAATGTTCCATTTGCCTTGGACAATTGGAAGATGGGGATCAAGTGCGATTGTTACCAGCTTGTAACCATGCTTTCCATAGACCATGCATTGATGCATGGTTCAAGGACCATGCCAATTGCCCTATTTGTCGCTCACCTATCACTTGTGATTGTGAACTAGCAATGCCAATATCTCCACAAAATGTTAGCACCCAACAAAGGGTCTCACTTGTGTCTAGGAATATTCCAAGTGATCATCATCCATTCATTAATGATGATGTGAATGTGAGTGATTCCACCTTATCAGGATTTCAACACCCAAGCCTTGTGTTGCTTCACTCTCTCTCTCTCTCATCACACATGCAGAGAAAGCCTCAAACTTTATTCATGGGTTTGAAAAGATCCTTGTCTATGGATGAATTATCTTCATATATTCTCACTACTATACAAAGAGATGAGGGAGAGGCTTCAACCTCTTCTTCTACCAAAGAGTTCATGATGAGTCAGTATAACTATAGATCAAGATCACTTAGACACGTTGATCTCATGTCTTCAATGTCGATGACGTCCTTCTCGCAATTTCAGAATAGTGGAAGTGGGAGATACAGTGGATTTCTCCCAAATTGA 876 0.4053 MDEKEANPAMESYVFPLVISAAGILCSTLVIAVYNCILLRYFVMPSRLQRRNNRNRSQMKNSGVHEEILNKIPVFSISPQTSGVFHLDHDECSICLGQLEDGDQVRLLPACNHAFHRPCIDAWFKDHANCPICRSPITCDCELAMPISPQNVSTQQRVSLVSRNIPSDHHPFINDDVNVSDSTLSGFQHPSLVLLHSLSLSSHMQRKPQTLFMGLKRSLSMDELSSYILTTIQRDEGEASTSSSTKEFMMSQYNYRSRSLRHVDLMSSMSMTSFSQFQNSGSGRYSGFLPN* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0254 291 SUPERFAMILY RING/U-box 84 140 - -
Apr4g0254 291 PANTHER RING-H2 FINGER PROTEIN ATL73-LIKE 12 280 - -
Apr4g0254 291 Pfam Ring finger domain 90 134 IPR001841 -
Apr4g0254 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 139 IPR013083 -
Apr4g0254 291 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 280 IPR044675 -
Apr4g0254 291 SMART ring_2 92 133 IPR001841 -
Apr4g0254 291 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Apr4g0254 291 CDD RING-H2_PA-TM-RING 91 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0254 Apr-Chr4 2158629 2161985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0254 19 237 C3H Transcription Factor Family AT5G17600 27.848 1.46e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0254 - - aprc:113863869 565.074