Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0251 ATGGATGTTGCCGTCAAGCTGGAATCGGAATCCAAAACCGTTTCCATGGATCAGCCTCGGAAACTTTCCGTGGTGAATGGTTACATTGTTTATACTCGAGCCAAGAGGTCCCTTGATTCGTGTAACGGTTTTTCCGACGACGTGGAATTCAAGTCGAATGCGGAGGAACTTGCTGTAAGAACGGAGAACGGAGTTGATTACTGCACGGGACAAGATAGCGAGTGTAAGGAGCTGAAGAGTGAGTCTTCGGAGGTGGTGGTGAGGAAGTTCAAGAGGTGTAGGCGATCGGCGTCGAAAGCGAGCGTTGAAAATGGTGATAAGATGGTGACTGAGTCGGAACAAGTTGTTGCGAATGGTGGAATCAACGGTGCATTAGGTACTCCCAGGAATAAAATGGAGCTGAAGATGTCGAAGAAGATTGTGGTCAATAGGAAGCCTATGACTGTTAAGGAGCTCTTCGATACAGGTTTACTCGATGGGGTTTCAGTAGTTTACATGGGCGGCATTAAGAAGGCTTCGGGATTACGGGGTGTTATTAGAGATGGGGGAATATTGTGCTCGTGTTGCCTGTGCAATGGACGGCGGGTTATACCACCTTCCCAATTTGAGATCCATGCTTGCAAACAATATAGGAGAGCAGCGCAGTATATTTGCCTTGAGAATGGGAAGAGCCTGCTTGATCTACTGAGAGCATGCAGGGGAGCTCCCCTGCATACTTTGGAGGTGACAATTCAAAATTTTGTTGGTTCTCCACCTGAAGAAAAATATTTTACTTGTAAAAGGTGTAAAGGATGTTTCCCTTCTTCATGTGTGGAAAGAGTGGGTCCCATATGCCGTTCTTGTGTGGAATCAAGGAAATCTGAAGAAAGTTCAAATAACGCAGTTGGCAAAAGAGTTAGGTCCCCTAGACCAGTGTTGGTCTCCAACCCATCGAGTACCTCCGAGCTGTCTTTCTCTTCACAAATTAAGAGACACCGGAAGAAAAGAACAAAGTCACCGAAAAGGGTTAGCAGCTCAAATTCCCTCAAGAATGCTTCTGCGCCTGCTCTATCCCAGAAGAAAATTTTGTTGAAGAAGAAAAAGAAGTCACTGCCGGTAAAATTGAAGTCCCCAGAAGTTACTTCAAATTCAAAATGTTTATCTAACAAGAATCATTGGAAGATAACTAAGAAGGATCAGCGGTTGCATAAGTTAGTTTTTGAGGAAGATGGATTGCCTGATGGAACTGAAGTAGCATATTATGCACGTGGGCAGTTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCGTATATTTACACATCAAACGGGGTGTCTCTCCATGAGTTAGCAATATCTCTCTCAAAGGATCGAAAATACTCTGCGAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCTAGAGCATTTCATAAAGAATGTGCAGCTCTATCTAGTATTCCGCGTGGTGACTGGTATTGTCAATTTTGCCAAAACATGTTTCAGAGAGAAAAGTTTGTGGCACACAACGCCAATGCTGTTGCAGCTGGAAGGGTTGAAGGAGTTGATCCAATTGAACAGATTACCAATAGATGCATTCGCATAGTCAAGGACATTGAAGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGATTTCAGCAGATCTGGCTTTGGTCCACGCACAATAATACTCTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAATTGCCAGAAGGAAATTGGCTTTGTTGCAACGATTGCGCAAGAATACATTCTACTTTGGAGAACCTGTTGGTTAGAGGGGCTGAGAGACTCCCTGAATCTCTCTTGGATGTTCTAAAGAAGAAGCAAGAGGAAAAAGGATTAGAACCCATAAATGATGTAAGATGGAGGCTTCTTAGTGGCAAGATTGCTTCTCCTGAAACTAGAACATTGCTTTTGGAGGCTGTGTCAATTTTTCATGAATGCTTTAATCCTATAGTTGATGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTGCGAGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAATTTTTGGCACAGATATTGCTGAACTCCCTTTAGTTGCAACAAGTAACAGGAACCATGGAAAAGGTTACTTCCAAACACTATTCTCCTGCATCGAGAGGCTACTGGCTTTCTTGAATGTGAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAATCCATATGGACGGATAAGTTTGGGTTTAGCAAGATGCAACCCGATCAGCTTACCAACTACCGAAAGAACTGCAATCAGATGGTCACATTCAAAGGGACAAATATGCTACATAAAATGGTACCTCCATGTCGGATCATCAATAATCAATTATGA 2559 0.4385 MDVAVKLESESKTVSMDQPRKLSVVNGYIVYTRAKRSLDSCNGFSDDVEFKSNAEELAVRTENGVDYCTGQDSECKELKSESSEVVVRKFKRCRRSASKASVENGDKMVTESEQVVANGGINGALGTPRNKMELKMSKKIVVNRKPMTVKELFDTGLLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGAPLHTLEVTIQNFVGSPPEEKYFTCKRCKGCFPSSCVERVGPICRSCVESRKSEESSNNAVGKRVRSPRPVLVSNPSSTSELSFSSQIKRHRKKRTKSPKRVSSSNSLKNASAPALSQKKILLKKKKKSLPVKLKSPEVTSNSKCLSNKNHWKITKKDQRLHKLVFEEDGLPDGTEVAYYARGQLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECAALSSIPRGDWYCQFCQNMFQREKFVAHNANAVAAGRVEGVDPIEQITNRCIRIVKDIEAELSGCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCARIHSTLENLLVRGAERLPESLLDVLKKKQEEKGLEPINDVRWRLLSGKIASPETRTLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNRNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMQPDQLTNYRKNCNQMVTFKGTNMLHKMVPPCRIINNQL* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0251 852 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 55 848 - -
Apr4g0251 852 Pfam Tify domain binding domain 426 472 IPR032308 -
Apr4g0251 852 Pfam Tify domain binding domain 177 232 IPR032308 -
Apr4g0251 852 ProSiteProfiles Zinc finger PHD-type profile. 486 531 IPR019787 -
Apr4g0251 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 563 IPR013083 -
Apr4g0251 852 Gene3D - 676 842 - -
Apr4g0251 852 SUPERFAMILY FYVE/PHD zinc finger 568 630 IPR011011 -
Apr4g0251 852 MobiDBLite consensus disorder prediction 291 349 - -
Apr4g0251 852 SUPERFAMILY FYVE/PHD zinc finger 475 533 IPR011011 -
Apr4g0251 852 MobiDBLite consensus disorder prediction 305 319 - -
Apr4g0251 852 ProSitePatterns Zinc finger PHD-type signature. 489 528 IPR019786 -
Apr4g0251 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 635 IPR013083 -
Apr4g0251 852 PANTHER AUTOIMMUNE REGULATOR 55 848 - -
Apr4g0251 852 Pfam PHD-finger 489 530 IPR019787 -
Apr4g0251 852 SMART PHD_3 488 529 IPR001965 -
Apr4g0251 852 SMART PHD_3 576 633 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0251 Apr-Chr4 2119924 2133411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0251 138 852 PHD Transcription Factor Family AT2G36720 54.150 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr4g0251 TDBD 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0251 - - gmx:100802562 1473.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0251 4 2119924 2133411 Apr8g0554 8 4911525 4920723 PCT
Apr8g0003 8 80706 88108 Apr4g0251 4 2119924 2133411 PCT