Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0250 ATGAGATTCAACAGAACCCTCTTTTGGCTTTCTGGCTTTGTCATTTTTTTCTTTTCTATCATAATTGTTCATTACACCACGCCACCTTCCTTCACCGCTACCACTGCCATTAGTCCTCAACGTAGTTTCAGTTTCCACCTTGGTATATTCTCTAAGATCATTAAGCTTAGTGGCGCTCAAGACTTTGTCTCTCTGCTAACAAGTATAGCCTGGAGACATCATCATCGAAGGAGGCATAAGGGAAAATGTGACAAGGCCAAATGGGCTTCCAAGCTTATTCAAGACTATAATGTGACTCTTGTTTTCACCGTTGACTTAAAGGGTTGTGGCAACTTCAGTAGTGTGCAGAAAGCAGTTGATGCTGTTCCTGAATCTAGCTGTGATACCACCCTTATCATTGTCGATTCTGGAACATACAGGGAGAAGGTCGTGGTGCAGGCCAACAAAACAAACTTGATACTTCAAGGTCAAGGGTATCTTAATACAATCATTGAATGGAATGACACAGCAAATTCCACCGGAGGGACTTCCTATAGCTACTCGTTTGCCGTCTTTGCTTCTAAGTTCACTGCTTACAGCATCAGCTTTAAGAACACGGCTCCTCCACCGTCACAAGGAGTGGTTGGGGCACAGGCAGTGGCAATGAGAGTTACAGGTGATCAAGCCGCATTCCATGGGTGTGGGTTTTATGGTGCACAGGACACACTCAATGATGACAATGGGAGACATTATTTTAAAGAATGTTTCATACAAGGATCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTACCATAAACTCTATAGCAAAAGAAGAGTTGGTAGGGGTTAGCGGGTCAATCACAGCTCAAGGGCGACAATCCATGAGCGAGCAAACAGGATTTTCCTTTGTGAATTGTAACATCATTGGGAGTGGGAAAGTGTGGCTTGGAAGAGCTTGGGGAGTGTGTGCCACTGTCGTCTTCTCAAAAACATTTATGTCTGATGTCGTAGCTCCTGATGGATGGAACGATTGGAGTGTTCCCTCTAGAGATCAGAGTGTCTTCTTTGGGGAGTACCATTGTGTGGGAGTGGGAGCAAATTATACGTCTAGAGTCTCTTATGCGAAGCAACTCAGGGATTACGAAGCAATCTCCTACATGAATATTTCTTACATTGATGGAAATGATTGGCTTCTTAATGATTTTCAGGACTACCATTCATACATATAG 1224 0.4306 MRFNRTLFWLSGFVIFFFSIIIVHYTTPPSFTATTAISPQRSFSFHLGIFSKIIKLSGAQDFVSLLTSIAWRHHHRRRHKGKCDKAKWASKLIQDYNVTLVFTVDLKGCGNFSSVQKAVDAVPESSCDTTLIIVDSGTYREKVVVQANKTNLILQGQGYLNTIIEWNDTANSTGGTSYSYSFAVFASKFTAYSISFKNTAPPPSQGVVGAQAVAMRVTGDQAAFHGCGFYGAQDTLNDDNGRHYFKECFIQGSIDFIFGNGRSLYEDCTINSIAKEELVGVSGSITAQGRQSMSEQTGFSFVNCNIIGSGKVWLGRAWGVCATVVFSKTFMSDVVAPDGWNDWSVPSRDQSVFFGEYHCVGVGANYTSRVSYAKQLRDYEAISYMNISYIDGNDWLLNDFQDYHSYI* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0250 407 Pfam Pectinesterase 104 393 IPR000070 GO:0030599|GO:0042545
Apr4g0250 407 PANTHER PECTINESTERASE 14-RELATED 11 399 - -
Apr4g0250 407 ProSitePatterns Pectinesterase signature 2. 250 259 IPR033131 -
Apr4g0250 407 Gene3D - 96 405 IPR012334 -
Apr4g0250 407 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 399 - -
Apr4g0250 407 SUPERFAMILY Pectin lyase-like 100 403 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0250 Apr-Chr4 2115091 2118007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0250 95 396 Carbohydrate Esterase AT1G05310 54.098 3.58e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0250 - - gmx:100802034 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0250 4 2115091 2118007 Apr8g0053 8 445875 448081 PCT