Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0236 ATGCAGGAGCAACAGGAACATGTGGTGTGCAAGGATCACATGCAAATTATCATGAAGGGAAAGCGCACAAAGCGTCAAAGGGTTCCATCTCCACTTAGGTTAACCATGTCAACATGTTCCAGTGTAGGAAGAAGCAGCACTGACAATTCCATAGGATTTGATCTCACTACAACCTCAAATGAATTCAGGAATAGAACAGAAGAGGAAGAGGACATGGCCAATTGTTTGATTCTCTTAGCTCAAGGCGGCCACCACCACCATCATCATCATACCCCAAAACCCTCACAACATGTGGCATCACGTGATCACAATAGCAACGAGGCAGGGTTATACCTTTATGAGTGCAAAACATGTAACCGATGCTTCCCTTCATTCCAAGCCCTTGGTGGCCACAGATCAGCCAGCCACAAGAAACCTAAGCCAAATACAGAAGTAGGTCATGACGGTTGTGACCCCACATGCACCACCCTCTCCTTACAAGTATCAACCAATAATAAGGCTTTGTATAATAGCTGCAGCAAAACGATTAGTACTAAATCTAAAGTTCATGAGTGTTCCATATGTGGGGCTGAATTCTCATCTGGGCAAGCCTTGGGGGGACATATGAGGCGGCATAGAAATCTTGTGAGCACTTCTACCACAATATCTATGAGTGGGGCAATTGCAAATAATGGTGGTAAAATCCAGGAAGCCAAGAAACACAAAGATGTTTTGGATTTGGACTTGAATCTTCCGGCACCTGAGGATGACCATAGGGAATCCAAGTTGTTTCCTTTTCAGTCCAAAGAAAAAGTTATTGGCTTCTCTGCAACTTCTTTGGTGGATTGTCATTACTAA 837 0.4397 MQEQQEHVVCKDHMQIIMKGKRTKRQRVPSPLRLTMSTCSSVGRSSTDNSIGFDLTTTSNEFRNRTEEEEDMANCLILLAQGGHHHHHHHTPKPSQHVASRDHNSNEAGLYLYECKTCNRCFPSFQALGGHRSASHKKPKPNTEVGHDGCDPTCTTLSLQVSTNNKALYNSCSKTISTKSKVHECSICGAEFSSGQALGGHMRRHRNLVSTSTTISMSGAIANNGGKIQEAKKHKDVLDLDLNLPAPEDDHRESKLFPFQSKEKVIGFSATSLVDCHY* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0236 278 SUPERFAMILY beta-beta-alpha zinc fingers 178 207 IPR036236 -
Apr4g0236 278 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Apr4g0236 278 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 4 278 - -
Apr4g0236 278 SMART c2h2final6 113 136 IPR013087 -
Apr4g0236 278 SMART c2h2final6 183 205 IPR013087 -
Apr4g0236 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 141 IPR013087 -
Apr4g0236 278 ProSitePatterns Zinc finger C2H2 type domain signature. 115 136 IPR013087 -
Apr4g0236 278 Gene3D Classic Zinc Finger 160 237 - -
Apr4g0236 278 PANTHER ZINC FINGER PROTEIN ZAT5 4 278 - -
Apr4g0236 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Apr4g0236 278 Pfam C2H2-type zinc finger 113 139 - -
Apr4g0236 278 Pfam C2H2-type zinc finger 182 206 - -
Apr4g0236 278 MobiDBLite consensus disorder prediction 82 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0236 Apr-Chr4 1994679 1995515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0236 9 278 C2H2 Transcription Factor Family AT2G28200 41.667 2.75e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g0236 zf-C2H2_6 7.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0236 - - gmx:100775268 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0236 4 1994679 1995515 Apr8g1843 8 28871441 28872430 ECH
Apr4g0236 4 1994679 1995515 Apr4g0236 4 1994679 1995515 ECH
Apr4g0236 4 1994679 1995515 Apr2g2160 2 26727490 26728902 ECH
Apr4g0236 4 1994679 1995515 Apr3g1310 3 27559012 27560326 ECH
Apr4g0236 4 1994679 1995515 Apr8g0541 8 4786773 4787642 PCT