Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0233 ATGTGCATTCACTGTGGTGTTTGCATGGGTAGATACTTCTGTTCCAAATGCAAGTTTTTCGATTATGATGTATCAAAAAATCAATACCATTGTAATGAATGTGGTATCTGCAGAATTGGAGGTGAAGAGAACTTTTTTCACTGTAACAAATGCGGATGTTGTTATTCATCGTTATTGAAGGATTCACACCGCTGCATTGAAAAAGCAATGCATCACAATTGCCCAGTTTGCTTTGAGTTTCTTTTTGATACAACGAAAGACATTACCGTGTTGCCATGTGGTCACACCATACATTTGGGATGTGTGAGACAAATGGAACAGCATTTGCAGTATTCATGCCCTGTTTGCTCAAAATCTTTTTGTGATATGTCGCGTGTGTGGGAGAATCTGGATGAGGAGGTTGCATCAACGCCTATGCCTGAAATGTATCAAAATAAAATGGTTTGGATTCTTTGCAACGACTGTGGGGAAATTTCTGAAGTAAGTTTTCATATTGTGGCGCACAAGTGCCTTAAATGCAAGTCCTATAACACGAGAAAGACAGCATCTGCTTCTTGCTCATCCAGGATGGAAGAGATGATTAGATAA 588 0.3929 MCIHCGVCMGRYFCSKCKFFDYDVSKNQYHCNECGICRIGGEENFFHCNKCGCCYSSLLKDSHRCIEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVRQMEQHLQYSCPVCSKSFCDMSRVWENLDEEVASTPMPEMYQNKMVWILCNDCGEISEVSFHIVAHKCLKCKSYNTRKTASASCSSRMEEMIR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0233 195 Gene3D - 145 188 - -
Apr4g0233 195 SUPERFAMILY Zinc hairpin stack 10 67 IPR037275 -
Apr4g0233 195 Pfam Zinc-ribbon 121 179 IPR039512 -
Apr4g0233 195 Pfam RING-type zinc-finger 74 114 IPR027370 -
Apr4g0233 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 138 IPR013083 -
Apr4g0233 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 1 190 - -
Apr4g0233 195 ProSiteProfiles Zinc finger RING-type profile. 74 117 IPR001841 -
Apr4g0233 195 SUPERFAMILY RING/U-box 72 122 - -
Apr4g0233 195 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 190 - -
Apr4g0233 195 ProSiteProfiles Zinc finger CTCHY-type profile. 9 73 IPR017921 -
Apr4g0233 195 SMART ring_2 74 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0233 Apr-Chr4 1966823 1969401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0233 6 185 C2H2 Transcription Factor Family AT3G18290 41.758 1.56e-38 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0233 K10144 - mnt:21405387 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0233 4 1966823 1969401 Apr4g0233 4 1966823 1969401 ECH